NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000219

7000000219: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525



Overview

Basic Information
IMG/M Taxon OID7000000219 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052731 | Ga0031097
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size105174310
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig891
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
Not Available1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F030786Metagenome184N
F047127Metagenome150N
F049707Metagenome146N
F054111Metagenome140N
F061927Metagenome131N
F063778Metagenome129Y
F064818Metagenome128N
F081456Metagenome114N
F089056Metagenome109N
F095632Metagenome105N
F097490Metagenome104N
F101360Metagenome102N
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3812726All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89633Open in IMG/M
C3836008All Organisms → cellular organisms → Bacteria779Open in IMG/M
C3873904All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1576Open in IMG/M
C3878474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1943Open in IMG/M
C3883146All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2740Open in IMG/M
SRS043018_WUGC_scaffold_18303Not Available580Open in IMG/M
SRS043018_WUGC_scaffold_2192All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium651Open in IMG/M
SRS043018_WUGC_scaffold_29147All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium645Open in IMG/M
SRS043018_WUGC_scaffold_35084All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1852Open in IMG/M
SRS043018_WUGC_scaffold_43525All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales637Open in IMG/M
SRS043018_WUGC_scaffold_56340All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1619Open in IMG/M
SRS043018_WUGC_scaffold_65060All Organisms → cellular organisms → Bacteria27075Open in IMG/M
SRS043018_WUGC_scaffold_65154All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1410Open in IMG/M
SRS043018_WUGC_scaffold_65523All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes12816Open in IMG/M
SRS043018_WUGC_scaffold_66823All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7015Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3812726C3812726__gene_164955F095632KETPGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
C3836008C3836008__gene_175013F061927MKNSIFILSTMLILGSCSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDERIDKAISSCIG
C3873904C3873904__gene_193124F089056VFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEEYDVSFIAITFTNKNEILFRKGIQ
C3878474C3878474__gene_195863F063778MPETISEGAQQKLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED
C3883146C3883146__gene_198819F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLF
SRS043018_WUGC_scaffold_18303SRS043018_WUGC_scaffold_18303__gene_15856F022002ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVHLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS043018_WUGC_scaffold_2192SRS043018_WUGC_scaffold_2192__gene_1485F054111MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI
SRS043018_WUGC_scaffold_29147SRS043018_WUGC_scaffold_29147__gene_27005F030786MKRTRINKVVFQMLVVMIVTGSLQLLLKNGSTTKGRNAVGTKKISLADITDGDKSKVVAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYQSLKVDC
SRS043018_WUGC_scaffold_35084SRS043018_WUGC_scaffold_35084__gene_33652F081456MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAD
SRS043018_WUGC_scaffold_43525SRS043018_WUGC_scaffold_43525__gene_43910F047127FILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNS
SRS043018_WUGC_scaffold_56340SRS043018_WUGC_scaffold_56340__gene_60875F097490MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSKMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKTIKYKYNNKEEYKIDKFYTDFPYNSFSNSKEKKKMHFMLKKKLDSSNIIKGYEFYNKDIETRTIKM
SRS043018_WUGC_scaffold_65060SRS043018_WUGC_scaffold_65060__gene_76575F103434VVEVTLAAVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPASLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS043018_WUGC_scaffold_65154SRS043018_WUGC_scaffold_65154__gene_76797F049707VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKAS
SRS043018_WUGC_scaffold_65523SRS043018_WUGC_scaffold_65523__gene_77729F018385LSRISGTEIMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISQLSLDS
SRS043018_WUGC_scaffold_66823SRS043018_WUGC_scaffold_66823__gene_82079F101360VSKENALRKAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLIEIEGGDA
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