NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000221

7000000221: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215



Overview

Basic Information
IMG/M Taxon OID7000000221 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052733 | Ga0028009
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size21393023
Sequencing Scaffolds5
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F040149Metagenome162N
F047508Metagenome149N
F067847Metagenome125N
F071329Metagenome122N
F074985Metagenome119N
F081456Metagenome114N
F081510Metagenome114N
F084342Metagenome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1247766All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae520Open in IMG/M
C1255925All Organisms → cellular organisms → Bacteria680Open in IMG/M
C1266477All Organisms → Viruses → Predicted Viral2443Open in IMG/M
SRS043676_WUGC_scaffold_19400All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca622Open in IMG/M
SRS043676_WUGC_scaffold_8888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales44133Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1247766C1247766__gene_35398F084342GQCGAKLFLLGGYLAIPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C1255925C1255925__gene_38410F040149VADEGAEKLWWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIDYFIYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP
C1266477C1266477__gene_42519F081510MKLPDMKAVKAAAKTTYTTSKILTKKYAPFILLGVGLVGYGYSVYEGVKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVESVVPNEGDFYGRWFKYSSNYAADDPEYNEAWVREVDNMLTARMAKAGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQELEPQLYVRWKTPRNLYATTNFKDLMPKKTRKELN
SRS043676_WUGC_scaffold_19400SRS043676_WUGC_scaffold_19400__gene_18652F047508GHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7187F074985MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7188F036281MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7189F027205MRAVKESEEFERKALVEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7194F071329MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVKEARDHVEIED
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7195F018385MMAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7202F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL
SRS043676_WUGC_scaffold_8888SRS043676_WUGC_scaffold_8888__gene_7206F081456MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAD
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