Sample 7000000239

Overview

Basic Information
IMG/M Taxon OID	7000000239 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052757 \| Ga0030475
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 763496533
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	174891667
Sequencing Scaffolds	4
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F078004	Metagenome	117	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F039198

Metagenome

164

F044554

Metagenome

154

F047755

Metagenome

149

F078004

Metagenome

117

F090484

Metagenome

108

F098313

Metagenome

104

F099406

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
SRS013951_WUGC_scaffold_10315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	40014	Open in IMG/M
SRS013951_WUGC_scaffold_56621	Not Available	133254	Open in IMG/M
SRS013951_WUGC_scaffold_65857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1162	Open in IMG/M
SRS013951_WUGC_scaffold_69073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	11975	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

SRS013951_WUGC_scaffold_10315

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

40014

Open in IMG/M

SRS013951_WUGC_scaffold_56621

Not Available

133254

Open in IMG/M

SRS013951_WUGC_scaffold_65857

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1162

Open in IMG/M

SRS013951_WUGC_scaffold_69073

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

11975

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
SRS013951_WUGC_scaffold_10315	SRS013951_WUGC_scaffold_10315__gene_17248	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEEYSVAIFVSGKENYPEILEKIITKQEGLNRNVC
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97399	F090484	MIKISFRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKNFWDGYEQSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSQEKIATVKSGMAEAEACCDEVGTSVAGVCGRISRRMKSYNNTVADKKADFNEVRDMYAEFAGDMAKAVGSVNEDICTYVKAEQFKEKIENMDITIRSLSNNNTTDNDTGLDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97419	F099406	MAEVGYNSKFEGLEVDSRLEKVIQAEVATAEAEGKGGLIPAPPAGSQDGSKALLSNMTWGDNITKQYVDNAVSAAGWKKQIVTVLPNVDEAADNVMYLVKDDLASTETGNVYNEYILVTDPEGVKSLESIGMVSTSVDSTYLDLSIFPSTSGTLDEDSFAKVMDAYNNNITLGKLSFNYFSLDYFLDNDNSELKIIAVLFNNTNLEEEVPGSYIDIEMVTYVVAQDKTYRAIANTVTLFNTMLSYLEFMAKTPNVVTTLASLPTDAYNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGSDITQPLPTTGQFQSMSGDSVTIPVNSFIELSIWYINDKLVIRVGENA
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97457	F098313	MNGGILRLFYLPLLKKRMKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFVNLVRDKGDDRAFKLLWNFQSENEMTMRNICHESFHAAMSVCQYCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN
SRS013951_WUGC_scaffold_65857	SRS013951_WUGC_scaffold_65857__gene_118673	F047755	MENEKVKYLIDMINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI
SRS013951_WUGC_scaffold_69073	SRS013951_WUGC_scaffold_69073__gene_130827	F044554	MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
SRS013951_WUGC_scaffold_9783	SRS013951_WUGC_scaffold_9783__gene_16331	F078004	IHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF

Scaffold ID

Protein ID

Family

Sequence

SRS013951_WUGC_scaffold_10315

SRS013951_WUGC_scaffold_10315__gene_17248

F039198

MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEEYSVAIFVSGKENYPEILEKIITKQEGLNRNVC

SRS013951_WUGC_scaffold_56621

SRS013951_WUGC_scaffold_56621__gene_97399

F090484

MIKISFRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKNFWDGYEQSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSQEKIATVKSGMAEAEACCDEVGTSVAGVCGRISRRMKSYNNTVADKKADFNEVRDMYAEFAGDMAKAVGSVNEDICTYVKAEQFKEKIENMDITIRSLSNNNTTDNDTGLDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ

SRS013951_WUGC_scaffold_56621

SRS013951_WUGC_scaffold_56621__gene_97419

F099406

MAEVGYNSKFEGLEVDSRLEKVIQAEVATAEAEGKGGLIPAPPAGSQDGSKALLSNMTWGDNITKQYVDNAVSAAGWKKQIVTVLPNVDEAADNVMYLVKDDLASTETGNVYNEYILVTDPEGVKSLESIGMVSTSVDSTYLDLSIFPSTSGTLDEDSFAKVMDAYNNNITLGKLSFNYFSLDYFLDNDNSELKIIAVLFNNTNLEEEVPGSYIDIEMVTYVVAQDKTYRAIANTVTLFNTMLSYLEFMAKTPNVVTTLASLPTDAYNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGSDITQPLPTTGQFQSMSGDSVTIPVNSFIELSIWYINDKLVIRVGENA

SRS013951_WUGC_scaffold_56621

SRS013951_WUGC_scaffold_56621__gene_97457

F098313

MNGGILRLFYLPLLKKRMKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFVNLVRDKGDDRAFKLLWNFQSENEMTMRNICHESFHAAMSVCQYCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN

SRS013951_WUGC_scaffold_65857

SRS013951_WUGC_scaffold_65857__gene_118673

F047755

MENEKVKYLIDMINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI

SRS013951_WUGC_scaffold_69073

SRS013951_WUGC_scaffold_69073__gene_130827

F044554

MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

SRS013951_WUGC_scaffold_9783

SRS013951_WUGC_scaffold_9783__gene_16331

F078004

IHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000239: Human stool microbial communities from NIH, USA - visit 1, subject 763496533

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences