Sample 7000000293

Overview

Basic Information
IMG/M Taxon OID	7000000293 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052816 \| Ga0031305
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 246515023
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	103540260
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F066860	Metagenome	126	N
F076191	Metagenome	118	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F095631	Metagenome	105	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F105376	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F051210

Metagenome / Metatranscriptome

144

F066860

Metagenome

126

F076191

Metagenome

118

F080166

Metagenome

115

F081455

Metagenome

114

F085820

Metagenome

111

F089057

Metagenome

109

F095631

Metagenome

105

F099453

Metagenome

103

F103431

Metagenome

101

F105376

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
C4587943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	503	Open in IMG/M
C4683265	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1972	Open in IMG/M
SRS023352_LANL_scaffold_3665	Not Available	4304	Open in IMG/M
SRS023352_LANL_scaffold_39090	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4761	Open in IMG/M
SRS023352_LANL_scaffold_61348	Not Available	1265	Open in IMG/M
SRS023352_LANL_scaffold_74681	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2565	Open in IMG/M
SRS023352_LANL_scaffold_76280	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5642	Open in IMG/M
SRS023352_LANL_scaffold_76904	Not Available	2453	Open in IMG/M
SRS023352_LANL_scaffold_83650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	2241	Open in IMG/M
SRS023352_LANL_scaffold_83739	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	8609	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C4587943

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

503

Open in IMG/M

C4683265

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

1972

Open in IMG/M

SRS023352_LANL_scaffold_3665

Not Available

4304

Open in IMG/M

SRS023352_LANL_scaffold_39090

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

4761

Open in IMG/M

SRS023352_LANL_scaffold_61348

Not Available

1265

Open in IMG/M

SRS023352_LANL_scaffold_74681

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

2565

Open in IMG/M

SRS023352_LANL_scaffold_76280

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

5642

Open in IMG/M

SRS023352_LANL_scaffold_76904

Not Available

2453

Open in IMG/M

SRS023352_LANL_scaffold_83650

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria

2241

Open in IMG/M

SRS023352_LANL_scaffold_83739

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

8609

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C4587943	C4587943__gene_151104	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAED
C4683265	C4683265__gene_185764	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNNIIKRINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLR
C4683265	C4683265__gene_185765	F081455	METTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLENKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
SRS023352_LANL_scaffold_3665	SRS023352_LANL_scaffold_3665__gene_3528	F105376	MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK
SRS023352_LANL_scaffold_39090	SRS023352_LANL_scaffold_39090__gene_42689	F099453	MLRRKDMNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
SRS023352_LANL_scaffold_61348	SRS023352_LANL_scaffold_61348__gene_68971	F085820	MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKTIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSDKGKK
SRS023352_LANL_scaffold_74681	SRS023352_LANL_scaffold_74681__gene_86427	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRFTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA
SRS023352_LANL_scaffold_76280	SRS023352_LANL_scaffold_76280__gene_88936	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVISQIRHTASSKEGKALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRSVLSRYLNNM
SRS023352_LANL_scaffold_76904	SRS023352_LANL_scaffold_76904__gene_89908	F051210	LRGNEYAKMFSRNEEMMNVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGAFELPVTINTGTAAYSPLVGRKLIPGTVRVKVEDGTGKKFELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAISNPAGKITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQVALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINYRLISTLEKGYTGDVMNDLDLSNASTSLASKFQDYRSRVDLFDAYLINVETSLATRAVKGVTTTAYVAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIHEEQGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS023352_LANL_scaffold_83650	SRS023352_LANL_scaffold_83650__gene_102511	F103431	MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDDDKDAESQKEGFHVCIPEG
SRS023352_LANL_scaffold_83739	SRS023352_LANL_scaffold_83739__gene_102770	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTFHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVHDFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA

Scaffold ID

Protein ID

Family

Sequence

C4587943

C4587943__gene_151104

F066860

MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAED

C4683265

C4683265__gene_185764

F080166

VNILANFENYNKVVEQIFELNYYLTFKLEVTFNNIIKRINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLR

C4683265

C4683265__gene_185765

F081455

METTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLENKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK

SRS023352_LANL_scaffold_3665

SRS023352_LANL_scaffold_3665__gene_3528

F105376

MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK

SRS023352_LANL_scaffold_39090

SRS023352_LANL_scaffold_39090__gene_42689

F099453

MLRRKDMNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA

SRS023352_LANL_scaffold_61348

SRS023352_LANL_scaffold_61348__gene_68971

F085820

MLFLATTFFSCETGEPAPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKTIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDHLKQRIVLRLADGTEIEKELSDKGKK

SRS023352_LANL_scaffold_74681

SRS023352_LANL_scaffold_74681__gene_86427

F076191

MKIIAENPAEEALLWRIKALSDELVNQDNRFTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA

SRS023352_LANL_scaffold_76280

SRS023352_LANL_scaffold_76280__gene_88936

F089057

MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVISQIRHTASSKEGKALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRSVLSRYLNNM

SRS023352_LANL_scaffold_76904

SRS023352_LANL_scaffold_76904__gene_89908

F051210

LRGNEYAKMFSRNEEMMNVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRQVLPNLGPDQYQDVQVMGAFELPVTINTGTAAYSPLVGRKLIPGTVRVKVEDGTGKKFELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAISNPAGKITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQVALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINYRLISTLEKGYTGDVMNDLDLSNASTSLASKFQDYRSRVDLFDAYLINVETSLATRAVKGVTTTAYVAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIHEEQGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF

SRS023352_LANL_scaffold_83650

SRS023352_LANL_scaffold_83650__gene_102511

F103431

MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDDDKDAESQKEGFHVCIPEG

SRS023352_LANL_scaffold_83739

SRS023352_LANL_scaffold_83739__gene_102770

F095631

MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTFHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVHDFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARRNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKTDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000293: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 246515023

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences