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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000306 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052832 | Ga0030583 |
| Sample Name | Human stool microbial communities from NIH, USA - visit 1, subject 550534656 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 59857482 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → unclassified Pseudoflavonifractor → Pseudoflavonifractor sp. 60 | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F076189 | Metagenome | 118 | N |
| F087335 | Metagenome | 110 | N |
| F089054 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C3098755 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → unclassified Pseudoflavonifractor → Pseudoflavonifractor sp. 60 | 562 | Open in IMG/M |
| SRS043001_WUGC_scaffold_25222 | All Organisms → cellular organisms → Bacteria | 2750 | Open in IMG/M |
| SRS043001_WUGC_scaffold_29215 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 2295 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C3098755 | C3098755__gene_99698 | F076189 | MPGRLCYLPGIAFFFFLFPFIKPLLYVEKLQTGTVLPVVSDLYREFAEPSVHFDSHAIQSAQKQLRMLCNFHENTF |
| SRS043001_WUGC_scaffold_25222 | SRS043001_WUGC_scaffold_25222__gene_35251 | F089054 | MLTKGKFLVSFEVPGHTKKYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP |
| SRS043001_WUGC_scaffold_29215 | SRS043001_WUGC_scaffold_29215__gene_41121 | F087335 | MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVGEPELLIRCVTEESVETVYQGVAN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |