NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000416

7000000416: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319



Overview

Basic Information
IMG/M Taxon OID7000000416 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052965 | Ga0031005
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size93523753
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F043991Metagenome155N
F051212Metagenome144N
F054109Metagenome140N
F057446Metagenome136N
F061926Metagenome131N
F063778Metagenome129Y
F066860Metagenome126N
F070224Metagenome123N
F077403Metagenome117N
F095630Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2239416Not Available1122Open in IMG/M
SRS011343_Baylor_scaffold_14704All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces3838Open in IMG/M
SRS011343_Baylor_scaffold_28902Not Available910Open in IMG/M
SRS011343_Baylor_scaffold_38303Not Available1608Open in IMG/M
SRS011343_Baylor_scaffold_43776All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1506Open in IMG/M
SRS011343_Baylor_scaffold_45051All Organisms → Viruses → Predicted Viral1635Open in IMG/M
SRS011343_Baylor_scaffold_51376All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium921Open in IMG/M
SRS011343_Baylor_scaffold_52321All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2170Open in IMG/M
SRS011343_Baylor_scaffold_62918All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2836Open in IMG/M
SRS011343_Baylor_scaffold_64166All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales718Open in IMG/M
SRS011343_Baylor_scaffold_70636All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae4593Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2239416C2239416__gene_162951F054109MVGRPKSKKGVKVHTAFKIYPVDKARVQAMADKLDMSLSAYINKAVLEKVERDEKSEN
SRS011343_Baylor_scaffold_14704SRS011343_Baylor_scaffold_14704__gene_15674F063778MPETISEGAQQQLLQQLQDALGLVKKADTCALDVAAITHSAADGHQLTEVMLQELTTAREYLKSCVDQIEHAISNVKAIPLDPPPED
SRS011343_Baylor_scaffold_28902SRS011343_Baylor_scaffold_28902__gene_33309F070224MKRLLFLLLTLLHCTAWGQVYNTPDSIYVVSSGVYIPPVSGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAAGFPEMKEYELYYKGAGEEITKEDFDSIKFTRMPTALREIKKYKLPRARRTTGEVDRWQHP
SRS011343_Baylor_scaffold_38303SRS011343_Baylor_scaffold_38303__gene_45748F022002MSRRLALTLGLLLALLFSLPSHAQDGRSKMPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFAFGDLEILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS011343_Baylor_scaffold_43776SRS011343_Baylor_scaffold_43776__gene_53307F051212HSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKFSQLYNHLNLEK
SRS011343_Baylor_scaffold_45051SRS011343_Baylor_scaffold_45051__gene_55102F043991MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDNGTEVSFYKGRNLIYADILFSKGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA
SRS011343_Baylor_scaffold_51376SRS011343_Baylor_scaffold_51376__gene_64387F061926VLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS011343_Baylor_scaffold_52321SRS011343_Baylor_scaffold_52321__gene_65788F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS011343_Baylor_scaffold_62918SRS011343_Baylor_scaffold_62918__gene_83082F095630MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVYDI
SRS011343_Baylor_scaffold_64166SRS011343_Baylor_scaffold_64166__gene_85411F057446SYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVPYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS011343_Baylor_scaffold_70636SRS011343_Baylor_scaffold_70636__gene_100790F077403MCAVYAEERISVHFEVRWHRERNPMDTLRRGLDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
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