NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000426

7000000426: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834



Overview

Basic Information
IMG/M Taxon OID7000000426 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052975 | Ga0028015
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31617334
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → Viruses → Predicted Viral2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036281Metagenome170N
F043991Metagenome155N
F045567Metagenome152N
F049707Metagenome146N
F092232Metagenome107N
F095632Metagenome105N
F101358Metagenome102Y
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2036572All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1094Open in IMG/M
C2042312All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4165573Open in IMG/M
SRS043239_WUGC_scaffold_15929All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae523Open in IMG/M
SRS043239_WUGC_scaffold_17625All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium677Open in IMG/M
SRS043239_WUGC_scaffold_39284All Organisms → Viruses → Predicted Viral2859Open in IMG/M
SRS043239_WUGC_scaffold_41736All Organisms → Viruses → Predicted Viral1409Open in IMG/M
SRS043239_WUGC_scaffold_41757All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43956Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2036572C2036572__gene_65729F043991PSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA
C2042312C2042312__gene_70183F092232MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVASFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS043239_WUGC_scaffold_15929SRS043239_WUGC_scaffold_15929__gene_6052F045567MRQRDGHDTLTEELEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSL
SRS043239_WUGC_scaffold_17625SRS043239_WUGC_scaffold_17625__gene_6981F101358HLLTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEVLPTQSGNTYDHLGGDSACQLVGSVAAKASDTEVDNNLLVERVLGRVKQ
SRS043239_WUGC_scaffold_39284SRS043239_WUGC_scaffold_39284__gene_28690F105377VRDFDKLPLLTPEEAFERAWEEGGAAHPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS043239_WUGC_scaffold_41736SRS043239_WUGC_scaffold_41736__gene_33090F036281MITLIKVDEGPVDIYELRMKYLAKLKETDGVMLPKFIYRNKELFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAKERKTYNAKEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF
SRS043239_WUGC_scaffold_41757SRS043239_WUGC_scaffold_41757__gene_33175F049707VVSEYKSPHNDGHDPYILIWEYGSEVQQAEFIERWAEYEPDTGWTMWYFRLEDGKVMKFRALEWEQKDDVNHLTTIYFTPRKEQQ
SRS043239_WUGC_scaffold_41757SRS043239_WUGC_scaffold_41757__gene_33198F095632MRPLKKGTTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN
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