Basic Information | |
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IMG/M Taxon OID | 7000000472 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053023 | Ga0031066 |
Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 95577291 |
Sequencing Scaffolds | 25 |
Novel Protein Genes | 25 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 6 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 2 |
All Organisms → cellular organisms → Bacteria | 4 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018385 | Metagenome | 235 | Y |
F022002 | Metagenome | 216 | Y |
F041827 | Metagenome | 159 | Y |
F043235 | Metagenome | 156 | N |
F045567 | Metagenome | 152 | N |
F051211 | Metagenome | 144 | N |
F053092 | Metagenome | 141 | N |
F053097 | Metagenome / Metatranscriptome | 141 | Y |
F059076 | Metagenome | 134 | N |
F061927 | Metagenome | 131 | N |
F063778 | Metagenome | 129 | Y |
F064818 | Metagenome | 128 | N |
F070224 | Metagenome | 123 | N |
F076191 | Metagenome | 118 | N |
F077403 | Metagenome | 117 | N |
F081454 | Metagenome | 114 | N |
F084342 | Metagenome | 112 | N |
F084362 | Metagenome | 112 | N |
F089055 | Metagenome | 109 | Y |
F097490 | Metagenome | 104 | N |
F101358 | Metagenome | 102 | Y |
F103430 | Metagenome | 101 | N |
F103431 | Metagenome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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C3417696 | Not Available | 543 | Open in IMG/M |
C3422890 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens | 560 | Open in IMG/M |
C3447388 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 669 | Open in IMG/M |
C3456934 | Not Available | 732 | Open in IMG/M |
C3466658 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 814 | Open in IMG/M |
C3471322 | Not Available | 864 | Open in IMG/M |
C3482810 | Not Available | 1038 | Open in IMG/M |
C3505733 | Not Available | 2655 | Open in IMG/M |
C3506927 | All Organisms → Viruses → Predicted Viral | 3162 | Open in IMG/M |
C3507795 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 3805 | Open in IMG/M |
SRS051244_LANL_scaffold_12138 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 12217 | Open in IMG/M |
SRS051244_LANL_scaffold_18022 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 27530 | Open in IMG/M |
SRS051244_LANL_scaffold_25572 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 7986 | Open in IMG/M |
SRS051244_LANL_scaffold_30728 | All Organisms → cellular organisms → Bacteria | 2131 | Open in IMG/M |
SRS051244_LANL_scaffold_32352 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1253 | Open in IMG/M |
SRS051244_LANL_scaffold_33072 | All Organisms → cellular organisms → Bacteria | 2592 | Open in IMG/M |
SRS051244_LANL_scaffold_36288 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae | 1635 | Open in IMG/M |
SRS051244_LANL_scaffold_46583 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 4687 | Open in IMG/M |
SRS051244_LANL_scaffold_48329 | All Organisms → cellular organisms → Bacteria | 10189 | Open in IMG/M |
SRS051244_LANL_scaffold_50252 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 2270 | Open in IMG/M |
SRS051244_LANL_scaffold_52257 | All Organisms → cellular organisms → Bacteria | 698 | Open in IMG/M |
SRS051244_LANL_scaffold_54370 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1279 | Open in IMG/M |
SRS051244_LANL_scaffold_5541 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1717 | Open in IMG/M |
SRS051244_LANL_scaffold_58051 | Not Available | 3442 | Open in IMG/M |
SRS051244_LANL_scaffold_9756 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 2875 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
C3417696 | C3417696__gene_144566 | F070224 | LLASPLRPVKTRGSKIRTRDWVKVDYSYQNNIIIMGFGDSLVIENRFAYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRTPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYHHPEACIIH |
C3422890 | C3422890__gene_146896 | F103431 | MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFFHAERGNAAAAAFDGAFGENIADCHTEDDNDKNTESKEEGFHVCIPRG |
C3447388 | C3447388__gene_157906 | F089055 | VENMNITPECVNETPEIEAREKLAAIFSDAERRDNNFKVNPELGKTAIDIENTSRMNSADNGAVDLCSQALGSYGKSLDYINNSTLETVQAIGNLLQLFREDKTKESCK |
C3456934 | C3456934__gene_162391 | F103430 | MKLITIKAFIGSDNQTKQLNVDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMNTLGELKEVLNQEAIAYQIENDLQLI |
C3466658 | C3466658__gene_166899 | F076191 | MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPATYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGVLRDA |
C3471322 | C3471322__gene_169142 | F076191 | MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA |
C3482810 | C3482810__gene_174995 | F022002 | MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI |
C3505733 | C3505733__gene_189016 | F077403 | MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECACYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM |
C3506927 | C3506927__gene_190145 | F053097 | MFDIQGSKIKLSTDDLAIPPFKDYYNKAKDKSEALKEIEYVIWLYKWNTPYEAYPEKQRASVVAKDIFKDDKYIPSP |
C3507795 | C3507795__gene_190982 | F077403 | MDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM |
SRS051244_LANL_scaffold_12138 | SRS051244_LANL_scaffold_12138__gene_9414 | F045567 | MRQRDGRDTLTEELEGGITPLLYRTEGEARRPWVRMVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR |
SRS051244_LANL_scaffold_18022 | SRS051244_LANL_scaffold_18022__gene_14764 | F043235 | VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLTHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH |
SRS051244_LANL_scaffold_25572 | SRS051244_LANL_scaffold_25572__gene_22437 | F053092 | MQSDQGLILGLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
SRS051244_LANL_scaffold_30728 | SRS051244_LANL_scaffold_30728__gene_28187 | F051211 | MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILNLRRQRHERHVILRVFINGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP |
SRS051244_LANL_scaffold_32352 | SRS051244_LANL_scaffold_32352__gene_30019 | F059076 | TRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE |
SRS051244_LANL_scaffold_33072 | SRS051244_LANL_scaffold_33072__gene_30840 | F064818 | MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFNLIFGKKDYQQTAKQRILQRK |
SRS051244_LANL_scaffold_36288 | SRS051244_LANL_scaffold_36288__gene_34572 | F063778 | MPETISEGAQQKLLQQLQDTLGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLEPPPED |
SRS051244_LANL_scaffold_46583 | SRS051244_LANL_scaffold_46583__gene_47544 | F084342 | LGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIH |
SRS051244_LANL_scaffold_48329 | SRS051244_LANL_scaffold_48329__gene_49860 | F101358 | MTEKYSASLPPRQPEHLLTQPITTDGTPKERTTHPDTYIIPKHENVPQYLWNVLRSSGQLDERWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVPLAVLQEQNLDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR |
SRS051244_LANL_scaffold_50252 | SRS051244_LANL_scaffold_50252__gene_52532 | F081454 | MKAFKLVLLLFITSASLVFGQEKKYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEAKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK |
SRS051244_LANL_scaffold_52257 | SRS051244_LANL_scaffold_52257__gene_55520 | F061927 | MKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE |
SRS051244_LANL_scaffold_54370 | SRS051244_LANL_scaffold_54370__gene_58817 | F018385 | TETMMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK |
SRS051244_LANL_scaffold_5541 | SRS051244_LANL_scaffold_5541__gene_3794 | F041827 | MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK |
SRS051244_LANL_scaffold_58051 | SRS051244_LANL_scaffold_58051__gene_65321 | F084362 | MNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRDVDVAVKINNKPAGSLKDDKQSETEAEQKGFWWEK |
SRS051244_LANL_scaffold_9756 | SRS051244_LANL_scaffold_9756__gene_7375 | F097490 | MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
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