NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 7000000479

7000000479: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843



Overview

Basic Information
IMG/M Taxon OID7000000479 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053030 | Ga0031027
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size88161634
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04321
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047508Metagenome149N
F058221Metagenome135N
F059076Metagenome134N
F063778Metagenome129Y
F064819Metagenome128N
F081456Metagenome114N
F090516Metagenome108N
F097526Metagenome104Y
F101360Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2587730All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca500Open in IMG/M
SRS015803_WUGC_scaffold_12645All Organisms → cellular organisms → Bacteria → Proteobacteria2838Open in IMG/M
SRS015803_WUGC_scaffold_12739All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales798Open in IMG/M
SRS015803_WUGC_scaffold_19051All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1354Open in IMG/M
SRS015803_WUGC_scaffold_19574All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F04322090Open in IMG/M
SRS015803_WUGC_scaffold_29785All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales938Open in IMG/M
SRS015803_WUGC_scaffold_38264All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes875Open in IMG/M
SRS015803_WUGC_scaffold_40421All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1222Open in IMG/M
SRS015803_WUGC_scaffold_45634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1471Open in IMG/M
SRS015803_WUGC_scaffold_47569All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2812Open in IMG/M
SRS015803_WUGC_scaffold_6548All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales788Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2587730C2587730__gene_121128F047508GHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELI
SRS015803_WUGC_scaffold_12645SRS015803_WUGC_scaffold_12645__gene_15301F097526MTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLARQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQHKSGQLQRDLRYITTALGSEVQGKPQ
SRS015803_WUGC_scaffold_12739SRS015803_WUGC_scaffold_12739__gene_15400F058221LSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
SRS015803_WUGC_scaffold_19051SRS015803_WUGC_scaffold_19051__gene_23492F064819FSMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISMETMVSEENLDIERSDLEDLTRNLKDLSEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK
SRS015803_WUGC_scaffold_19574SRS015803_WUGC_scaffold_19574__gene_24165F097526MATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKAGRNGHPTPEEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRCDTDTELSVARDDAYGFAAALRDIPLNEKQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ
SRS015803_WUGC_scaffold_29785SRS015803_WUGC_scaffold_29785__gene_37773F090516MKSNLSVELFLAFERYFIENDEEVSLDKISSGFTDVVLGIEFLPQNMIEDIDKKKKLLKKYGFSSSTALAEDFRKRVLNIDEPIPEDFEKDGVGYVYTFISGYDTFYNRMYVFGIHCFGDCFEVTYFDLDNDAGAGDYYKGLEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLF
SRS015803_WUGC_scaffold_38264SRS015803_WUGC_scaffold_38264__gene_50514F081456PIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAFTVILYTISAE
SRS015803_WUGC_scaffold_40421SRS015803_WUGC_scaffold_40421__gene_53803F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS015803_WUGC_scaffold_45634SRS015803_WUGC_scaffold_45634__gene_62193F063778MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAAAGHQLTEVMLQELTTAREHLKSCANQIEHAISNVKAIPLDPPPED
SRS015803_WUGC_scaffold_47569SRS015803_WUGC_scaffold_47569__gene_65850F101360VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPRIDGLQIGTVSVSTPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFAAVAALDGFIKQTGEVPDGVEVVQGAPRISVRISTPQEEAIRDLISTGDISLLEIEGGDA
SRS015803_WUGC_scaffold_6548SRS015803_WUGC_scaffold_6548__gene_7735F059076MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVIT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.