NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000490

7000000490: Human stool microbial communities from NIH, USA - visit 1, subject 159571453



Overview

Basic Information
IMG/M Taxon OID7000000490 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053042 | Ga0030474
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159571453
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size123142464
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3
Not Available2
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F050794Metagenome145N
F055775Metagenome138N
F078005Metagenome117N
F102167Metagenome102N
F106193Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C1777444All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium645Open in IMG/M
C1798392Not Available789Open in IMG/M
C1811925Not Available921Open in IMG/M
C1825837All Organisms → Viruses → Predicted Viral1118Open in IMG/M
C1827030All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1140Open in IMG/M
C1849956All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1807Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C1777444C1777444__gene_100320F102167IKKYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK
C1798392C1798392__gene_112078F013656IYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKI
C1811925C1811925__gene_120158F050794MTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
C1825837C1825837__gene_128981F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVQAIALN
C1827030C1827030__gene_129766F078005IKIIYMEKSEFVKNLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLGVEANVMAGMDDMDFTCLMCEVYKQKAVKAIMMEKDDDEDN
C1849956C1849956__gene_146972F106193VSLINEINNFNNVGCNTCKEKALKAERERIERSMMNRTSSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYRCPPDEEVQEMRKEILDGRAIYIKP
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