NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000496

7000000496: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126



Overview

Basic Information
IMG/M Taxon OID7000000496 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053048 | Ga0031322
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size88556398
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040685Metagenome161N
F041827Metagenome159Y
F042387Metagenome158N
F043991Metagenome155N
F046433Metagenome151N
F076191Metagenome118N
F077404Metagenome117N
F081454Metagenome114N
F089055Metagenome109Y
F089057Metagenome109N
F094006Metagenome106Y
F094007Metagenome106N
F103433Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2693643All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes584Open in IMG/M
C2731929All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria925Open in IMG/M
C2751513All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1606Open in IMG/M
C2760937All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3646Open in IMG/M
C2763203All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria6963Open in IMG/M
SRS057692_LANL_scaffold_10796All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria729Open in IMG/M
SRS057692_LANL_scaffold_11049All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2816Open in IMG/M
SRS057692_LANL_scaffold_18244All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria886Open in IMG/M
SRS057692_LANL_scaffold_19702All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella8266Open in IMG/M
SRS057692_LANL_scaffold_27373All Organisms → cellular organisms → Bacteria11465Open in IMG/M
SRS057692_LANL_scaffold_31391All Organisms → cellular organisms → Bacteria4740Open in IMG/M
SRS057692_LANL_scaffold_31915All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA41628617Open in IMG/M
SRS057692_LANL_scaffold_43061All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae657Open in IMG/M
SRS057692_LANL_scaffold_58187All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum2962Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2693643C2693643__gene_134741F043991MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLVDGTEVSFYKGRNLIYSDILFSGGVRTILFKCRQKKNLTRFISRVLELSQGKPENIHPDFRA
C2731929C2731929__gene_148293F046433SPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRAKNKMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGED
C2751513C2751513__gene_154803F042387MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVITMVYEYNK
C2760937C2760937__gene_157810F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLAAFLLALVVQKIRALFGGITASVFVIMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYNRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
C2763203C2763203__gene_158752F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEKNNHHYNNPTTCVRSAHDNRELKDVIHLLILAGGNEIPSNHYGFLRNA
SRS057692_LANL_scaffold_10796SRS057692_LANL_scaffold_10796__gene_12283F089055PECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYGKSLDYINNSPLEAVQAIGNSLQRLREYKTERSCR
SRS057692_LANL_scaffold_11049SRS057692_LANL_scaffold_11049__gene_12631F046433MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE
SRS057692_LANL_scaffold_18244SRS057692_LANL_scaffold_18244__gene_21111F094007VKSRGVFCGVDYLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKRRSGWNKGCIDNNA
SRS057692_LANL_scaffold_19702SRS057692_LANL_scaffold_19702__gene_23224F077404MNILKTAFAFFFALCFMMMGANSYAQTTDRINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYTPFTENNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTEVLPYIKGVFRFNRIQKR
SRS057692_LANL_scaffold_27373SRS057692_LANL_scaffold_27373__gene_33531F040685MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDKVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
SRS057692_LANL_scaffold_31391SRS057692_LANL_scaffold_31391__gene_39139F041827HFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYYIKEK
SRS057692_LANL_scaffold_31915SRS057692_LANL_scaffold_31915__gene_39858F089057MTNLIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSNDIYIKIFGNVLTFINMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM
SRS057692_LANL_scaffold_43061SRS057692_LANL_scaffold_43061__gene_55870F094006SRARVAAMRGALEPADPTGTLYESVVSVEAYIGELQAGGISRRDLFALGWSNVLAVAELGAEASHAIDMYDIAVCEPLSELFTEELEYAFNFSA
SRS057692_LANL_scaffold_58187SRS057692_LANL_scaffold_58187__gene_82116F081454MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKT
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