NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000510

7000000510: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937



Overview

Basic Information
IMG/M Taxon OID7000000510 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053063 | Ga0031113
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size142498461
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F030786Metagenome184N
F043990Metagenome155N
F047508Metagenome149N
F055792Metagenome138N
F061925Metagenome131N
F061926Metagenome131N
F064819Metagenome128N
F071327Metagenome122N
F077403Metagenome117N
F084362Metagenome112N
F090516Metagenome108N
F092231Metagenome107Y
F094006Metagenome106Y
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3795965All Organisms → cellular organisms → Bacteria788Open in IMG/M
SRS053917_LANL_scaffold_12104Not Available4931Open in IMG/M
SRS053917_LANL_scaffold_16125Not Available6543Open in IMG/M
SRS053917_LANL_scaffold_23801All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2643Open in IMG/M
SRS053917_LANL_scaffold_30004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1007Open in IMG/M
SRS053917_LANL_scaffold_35343All Organisms → cellular organisms → Bacteria31543Open in IMG/M
SRS053917_LANL_scaffold_36328All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3413Open in IMG/M
SRS053917_LANL_scaffold_38659Not Available839Open in IMG/M
SRS053917_LANL_scaffold_46574All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium567Open in IMG/M
SRS053917_LANL_scaffold_76790Not Available9101Open in IMG/M
SRS053917_LANL_scaffold_77188All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2724Open in IMG/M
SRS053917_LANL_scaffold_79877All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium665Open in IMG/M
SRS053917_LANL_scaffold_88277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1249Open in IMG/M
SRS053917_LANL_scaffold_89257All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1115Open in IMG/M
SRS053917_LANL_scaffold_99591All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae5107Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3795965C3795965__gene_258023F047508GHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS053917_LANL_scaffold_12104SRS053917_LANL_scaffold_12104__gene_28280F084362MNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK
SRS053917_LANL_scaffold_16125SRS053917_LANL_scaffold_16125__gene_37239F030786MKRIRIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNAMGAKKISLADITEGDDSTEGVLKVKYFDDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS053917_LANL_scaffold_23801SRS053917_LANL_scaffold_23801__gene_54412F043990MIKKLGIIFTFGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGERVIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTARKEICIYNQIF
SRS053917_LANL_scaffold_30004SRS053917_LANL_scaffold_30004__gene_68131F101358VQRALVSERFLLSIISWYHKKMTEKHSASLPPRQEHLLTQPITTDGTPEKRTTHSDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYEHLSGGSARQLVGSVAAKASDGELDNSLLVERALKR
SRS053917_LANL_scaffold_35343SRS053917_LANL_scaffold_35343__gene_79594F061925MSWEYSLNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDGIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
SRS053917_LANL_scaffold_36328SRS053917_LANL_scaffold_36328__gene_81800F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEILQEIKKYK
SRS053917_LANL_scaffold_38659SRS053917_LANL_scaffold_38659__gene_86785F055792ERSTYQEEIDEVDDATERERLHRTSYAFTLSLFVERQSMEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARGVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS053917_LANL_scaffold_46574SRS053917_LANL_scaffold_46574__gene_103920F061926IMMIKTAKHIKTFLASMLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS053917_LANL_scaffold_76790SRS053917_LANL_scaffold_76790__gene_166713F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS053917_LANL_scaffold_77188SRS053917_LANL_scaffold_77188__gene_167584F094006MWGALELAGPTGVLYESTVCVEAHIGYLQAGGIARRALFAFGGSNLLAVAELGAKAPYAIDMYDIALSKPLSELFAEELEYTFNFGA
SRS053917_LANL_scaffold_79877SRS053917_LANL_scaffold_79877__gene_173087F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVAALLFEYAYPWRLIFG
SRS053917_LANL_scaffold_88277SRS053917_LANL_scaffold_88277__gene_190549F092231MLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNDNKFAMLGSNKEGNVYNLYLHMAVNEVDDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL
SRS053917_LANL_scaffold_89257SRS053917_LANL_scaffold_89257__gene_192733F090516MKSNLSLKLFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLVTDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLF
SRS053917_LANL_scaffold_99591SRS053917_LANL_scaffold_99591__gene_216340F077403MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTS
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