NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000532

7000000532: Human stool microbial communities from NIH, USA - visit 1, subject 159166850



Overview

Basic Information
IMG/M Taxon OID7000000532 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053086 | Ga0030472
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159166850
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size139999389
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047755Metagenome149Y
F051935Metagenome143N
F067720Metagenome125Y
F068856Metagenome124N
F072366Metagenome121N
F074898Metagenome119N
F078003Metagenome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4683108All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales726Open in IMG/M
C4701661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales847Open in IMG/M
C4716143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales985Open in IMG/M
C4728077All Organisms → Viruses → Predicted Viral1151Open in IMG/M
C4754237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1921Open in IMG/M
C4754333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1927Open in IMG/M
SRS011529_WUGC_scaffold_6212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2016Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4683108C4683108__gene_184711F072366QGKRLPGYRYLREVWQKEAPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSMLFEFIPHAEQLDYVWFYRLTDEKRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMKWYRDNGRKLLEAKKQDE
C4701661C4701661__gene_194335F068856RLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
C4716143C4716143__gene_201851F051935MKRLMGLLLAMMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
C4728077C4728077__gene_208382F067720MASTTYEHPGGVTEMYAVQEQFRHVTKMVCARFLDLTKTYRLGNVPVMVRNAGQLPQPFWLGASCGGGSCGAAR
C4754237C4754237__gene_223121F074898MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMMAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDINKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQTSEVARAYRSAMRGYLLSNFRLSGQIGIEKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQTGSNFSLRLDNENANVFALNANVFTLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDVLF
C4754333C4754333__gene_223192F078003VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGTEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVAALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
SRS011529_WUGC_scaffold_6212SRS011529_WUGC_scaffold_6212__gene_11154F047755MENKKVEYLINMINDMDIKDKLRLAICMSQSKWSGLIYNTNENYEKFDNMLKSIDEEYRTTFINFGKYKVVMFAMAKLMEMETTEQNKVALYLSNILVKKLGL
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