NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000584

7000000584: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023



Overview

Basic Information
IMG/M Taxon OID7000000584 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053149 | Ga0031114
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size201559186
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis1
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F051212Metagenome144N
F051213Metagenome144N
F054110Metagenome140N
F063778Metagenome129Y
F066860Metagenome126N
F071327Metagenome122N
F076191Metagenome118N
F085821Metagenome111N
F095630Metagenome105N
F101360Metagenome102N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C6498818All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1173Open in IMG/M
C6501576All Organisms → Viruses → Predicted Viral1218Open in IMG/M
C6525583All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2043Open in IMG/M
SRS049318_LANL_scaffold_114218All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis7217Open in IMG/M
SRS049318_LANL_scaffold_139313Not Available674Open in IMG/M
SRS049318_LANL_scaffold_147580All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium779Open in IMG/M
SRS049318_LANL_scaffold_150512All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria36989Open in IMG/M
SRS049318_LANL_scaffold_158625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2131Open in IMG/M
SRS049318_LANL_scaffold_178615Not Available3215Open in IMG/M
SRS049318_LANL_scaffold_179743Not Available22334Open in IMG/M
SRS049318_LANL_scaffold_184817All Organisms → Viruses → Predicted Viral2532Open in IMG/M
SRS049318_LANL_scaffold_62847All Organisms → Viruses → Predicted Viral1381Open in IMG/M
SRS049318_LANL_scaffold_89940All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1389Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C6498818C6498818__gene_379637F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
C6501576C6501576__gene_380245F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKAYKGGD
C6525583C6525583__gene_385870F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTSGIAEDREETTEDVAI
SRS049318_LANL_scaffold_114218SRS049318_LANL_scaffold_114218__gene_153040F051213MNLYKILGALILALSFVFTSCDWVANEPTIEGNIDKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFATRNNRYQAHRPNMIIMQFAK
SRS049318_LANL_scaffold_139313SRS049318_LANL_scaffold_139313__gene_191142F085821MNHIFEQLAPLAETKKQQTTIAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCLDYLVAQGYPTAENKKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELIAETQSHIALLK
SRS049318_LANL_scaffold_147580SRS049318_LANL_scaffold_147580__gene_203984F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLN
SRS049318_LANL_scaffold_150512SRS049318_LANL_scaffold_150512__gene_208553F076191MKITAESPAEIALMWRIKALSDELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPTTCIRSAHDNQELKDVIHLLILAGGNEIPNNHYGSLSNA
SRS049318_LANL_scaffold_158625SRS049318_LANL_scaffold_158625__gene_221820F063778LLQQLQDALGLVKDADTSTRDVAAITHSAANGHQLTEVMLQQMTAARGYLKSCADQIEYAISSIKAIPLDPPPED
SRS049318_LANL_scaffold_178615SRS049318_LANL_scaffold_178615__gene_257836F022002ISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLTAGLYFYKGYLRKIAFLFDKLDVLELIESELENKYGMMAEGKETSKMKSKVIFDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELNRARSAEKESEI
SRS049318_LANL_scaffold_179743SRS049318_LANL_scaffold_179743__gene_260251F105378MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFIRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR
SRS049318_LANL_scaffold_184817SRS049318_LANL_scaffold_184817__gene_272728F018385MADLINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVCSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFSHDGLNELVFMPDSRRRTVSQLSFDHVPMKEVK
SRS049318_LANL_scaffold_62847SRS049318_LANL_scaffold_62847__gene_79514F101360VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFTAAAALDGFIKQPGEVPDGVEVVQGDPRISVRISSTQEEAIRDLISTGDISLLTLEGGD
SRS049318_LANL_scaffold_89940SRS049318_LANL_scaffold_89940__gene_117645F095630MIYSSLYKTVENNGLLAHIYEHLLAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGDAALRVAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADNTLIGQILKAIEIDVY
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