NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000587

7000000587: Human stool microbial communities from NIH, USA - visit 2, subject 159369152



Overview

Basic Information
IMG/M Taxon OID7000000587 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053152 | Ga0030556
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 159369152
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55282608
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044554Metagenome154N
F088921Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C698817Not Available513Open in IMG/M
C739314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741979Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C698817C698817__gene_47190F044554TQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
C739314C739314__gene_65725F088921LGATIRLYKIGAGKNHFLYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK

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