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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000698 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053283 | Ga0031315 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 114525782 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii | 1 |
| Not Available | 6 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 4 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | National Institutes of Health, USA | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046433 | Metagenome | 151 | N |
| F051211 | Metagenome | 144 | N |
| F051213 | Metagenome | 144 | N |
| F054110 | Metagenome | 140 | N |
| F073671 | Metagenome | 120 | N |
| F080164 | Metagenome | 115 | N |
| F089055 | Metagenome | 109 | Y |
| F094007 | Metagenome | 106 | N |
| F103432 | Metagenome | 101 | N |
| F105378 | Metagenome | 100 | N |
| F105380 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C3705407 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella amnii | 563 | Open in IMG/M |
| C3728063 | Not Available | 672 | Open in IMG/M |
| C3734375 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 714 | Open in IMG/M |
| C3750397 | Not Available | 864 | Open in IMG/M |
| SRS024318_LANL_scaffold_30842 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1222 | Open in IMG/M |
| SRS024318_LANL_scaffold_47088 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 861 | Open in IMG/M |
| SRS024318_LANL_scaffold_57406 | Not Available | 7927 | Open in IMG/M |
| SRS024318_LANL_scaffold_57648 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1289 | Open in IMG/M |
| SRS024318_LANL_scaffold_68996 | Not Available | 1537 | Open in IMG/M |
| SRS024318_LANL_scaffold_68997 | Not Available | 777 | Open in IMG/M |
| SRS024318_LANL_scaffold_72400 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1116 | Open in IMG/M |
| SRS024318_LANL_scaffold_78474 | All Organisms → Viruses → Predicted Viral | 2145 | Open in IMG/M |
| SRS024318_LANL_scaffold_78955 | Not Available | 742 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C3705407 | C3705407__gene_168359 | F051213 | MKASKLLWAVIVAFTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE |
| C3728063 | C3728063__gene_176377 | F080164 | FPLITEKDASEIDAPYAWRMPVVPLRLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGGRQTVDEQVTLHLPGFEKTEKPLHYKGQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS |
| C3734375 | C3734375__gene_178618 | F105380 | FKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRNKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK |
| C3750397 | C3750397__gene_184451 | F073671 | MNKEAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR |
| SRS024318_LANL_scaffold_30842 | SRS024318_LANL_scaffold_30842__gene_33762 | F089055 | CVTKTPEIKAREKEAREKLAVIFSDAEQRDNSKVNPELGKTAFDVANIPNNAAVDLCNKALGSYGKSLDRIKNSPLEAVWAIGTSLQHLRDEYKTEESCG |
| SRS024318_LANL_scaffold_47088 | SRS024318_LANL_scaffold_47088__gene_54211 | F094007 | VFCGVDYLWISWYNSYYMKSKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA |
| SRS024318_LANL_scaffold_57406 | SRS024318_LANL_scaffold_57406__gene_67675 | F105378 | MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPITMQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPLFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE |
| SRS024318_LANL_scaffold_57648 | SRS024318_LANL_scaffold_57648__gene_67996 | F051211 | MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLQRKIFRSNPESFYTAIDIWLATIRVNSSPNAFNLIETVYYSHLNNLIATR |
| SRS024318_LANL_scaffold_68996 | SRS024318_LANL_scaffold_68996__gene_83502 | F103432 | DDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHTLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFQQSIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSCPLLQGKRRNANFRTTEGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY |
| SRS024318_LANL_scaffold_68997 | SRS024318_LANL_scaffold_68997__gene_83504 | F103432 | DDAEPTQRAGLISTDSLIHAAEVYDGKAFEHVVSTTAAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAEFNADLDALFHESIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSDWLLKTKAEPSLYAPSFRLLVWQQPAEGCTKLRFTLTLVDGRSLVTEVPLY |
| SRS024318_LANL_scaffold_72400 | SRS024318_LANL_scaffold_72400__gene_88707 | F046433 | MIELPPSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCKTTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLILSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKINELSLPALANIVRPYRNGEDFDGLSRFRQLLERE |
| SRS024318_LANL_scaffold_78474 | SRS024318_LANL_scaffold_78474__gene_100295 | F054110 | VVLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD |
| SRS024318_LANL_scaffold_78955 | SRS024318_LANL_scaffold_78955__gene_101505 | F080164 | FPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLLLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |