UHGV-0000058 (vOTU-062709)

Viral Genome: UHGV-0000058

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0000058
vOTU ID	vOTU-062709
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_B_19_1591__NODE_93_length_160228_cov_49.498448_1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	96.96 (High-quality)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.95
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	24.57
Jumbo Phage?	No

Genome Content
Length (bps)	37,155
GC Content	27.42%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	53
CDS Density	95%
Average CDS Length (bps)	669.34
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0000058_1	K01447	50.0	0.00000000000006	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0000058_1	phrog_7698	141.8	7.10038e-42	endolysin	lysis
UniRef90	UHGV-0000058_1	UniRef90_A0A353JBB4	211.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0000058_1	877411.JMMA01000002_gene2384	132.0	5.49e-35	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0000058_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0000058_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-0000058_2	phrog_13256	42.4	0.0000000000085	N/A	unknown function
eggNOG-mapper	UHGV-0000058_2	871968.DESME_08815	47.8	0.00000188	N/A	N/A
structural_annotation	UHGV-0000058_5	PF03382	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_6	PF17790,NF011770	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_7	phrog_372	126.4	1.5e-37	tail protein	tail
UniRef90	UHGV-0000058_7	UniRef90_UPI0018E46574	176.0	2.10195e-44	N/A	N/A
eggNOG-mapper	UHGV-0000058_8	1121100.JCM6294_1111	100.0	2.77e-19	Phage minor structural protein	N/A
COG	UHGV-0000058_8	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0000058_9	1131462.DCF50_p1798	233.0	0	N/A	N/A
PHROG	UHGV-0000058_11	phrog_3287	115.2	5.2e-34	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0000058_11	1232449.BAHV02000016_gene1816	391.0	0	N/A	N/A
structural_annotation	UHGV-0000058_11	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000058_12	693746.OBV_23880	79.0	0.00000000000000217	N/A	N/A
structural_annotation	UHGV-0000058_12	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_14	phrog_1357	220.8	0	major head protein	head and packaging
UniRef90	UHGV-0000058_14	UniRef90_A0A8D9UHB3	277.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0000058_14	696281.Desru_1092	248.0	0	N/A	N/A
NCBIFam	UHGV-0000058_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0000058_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_16	phrog_156	100.5	1.1e-29	portal protein	head and packaging
UniRef90	UHGV-0000058_16	UniRef90_A0A8D9UHD1	325.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0000058_16	1121091.AUMP01000003_gene2583	263.0	0	N/A	N/A
structural_annotation	UHGV-0000058_16	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_18	K21523	56.9	8.6e-31	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0000058_18	phrog_2	103.7	2.8e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0000058_18	UniRef90_UPI00189AAAC0	527.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-0000058_18	693746.OBV_23980	471.0	0	phage Terminase large subunit	N/A
COG	UHGV-0000058_18	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0000058_18	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_19	K07474	49.8	0.00000000000011	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0000058_19	phrog_51	66.0	7.4e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0000058_19	UniRef90_A0A0V8DX64	96.3	9.01e-23	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0000058_19	1121871.AUAT01000040_gene914	68.6	0.00000000000127	N/A	N/A
Pfam	UHGV-0000058_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-0000058_19	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_20	PF15456	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_21	phrog_7839	75.9	5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0000058_21	202954.BBNK01000034_gene3794	127.0	7.09e-36	N/A	N/A
PHROG	UHGV-0000058_23	phrog_625	70.3	1.9e-20	N/A	unknown function
UniRef90	UHGV-0000058_23	UniRef90_A0A373D1H8	122.0	8.53e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0000058_23	397290.C810_01502	97.4	7.78e-25	N/A	N/A
structural_annotation	UHGV-0000058_23	PF12961,NF003443,COG2947	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_24	PF17340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_26	PF11680	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000058_27	1163671.JAGI01000002_gene1275	48.5	0.00000651	N/A	N/A
PHROG	UHGV-0000058_29	phrog_98	74.1	1.7e-21	N/A	unknown function
UniRef90	UHGV-0000058_29	UniRef90_UPI000BF73C64	79.7	9.74e-17	YopX family protein	N/A
eggNOG-mapper	UHGV-0000058_29	619693.HMPREF6745_2499	68.2	0.00000000000042	YopX protein	N/A
Pfam	UHGV-0000058_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0000058_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0000058_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_34	phrog_1891	224.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000058_34	UniRef90_R7FAF4	143.0	1.65e-39	N/A	N/A
eggNOG-mapper	UHGV-0000058_34	696281.Desru_1079	114.0	4.45e-29	HNH endonuclease	N/A
Pfam	UHGV-0000058_34	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0000058_34	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_35	phrog_2044	77.5	1.1e-22	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000058_35	796940.HMPREF9628_00162	66.2	0.000000000000214	N/A	N/A
structural_annotation	UHGV-0000058_35	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_37	phrog_478	117.5	6.3e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0000058_37	UniRef90_A0A376GT60	99.0	4.3e-24	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0000058_37	1123302.KB904167_gene507	99.0	7.21e-25	N/A	N/A
PHROG	UHGV-0000058_40	phrog_72	47.4	0.00000000000031	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000058_40	1408437.JNJN01000039_gene370	55.1	0.000000324	N/A	N/A
structural_annotation	UHGV-0000058_40	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_41	K03111	123.0	4.1e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000058_41	phrog_44	120.4	1.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000058_41	UniRef90_A0A846ZU98	122.0	8.27e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000058_41	720554.Clocl_4133	112.0	7.49e-30	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0000058_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000058_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000058_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000058_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000058_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000058_43	UniRef90_A0A7X5DCB3	147.0	6.89999e-42	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0000058_43	718252.FP2_01050	100.0	7.94e-24	N/A	N/A
structural_annotation	UHGV-0000058_43	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_44	phrog_124	159.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000058_44	UniRef90_UPI0018C46309	368.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0000058_44	718252.FP2_01060	314.0	0	AAA domain	N/A
Pfam	UHGV-0000058_44	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0000058_44	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0000058_44	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_45	K03111	57.1	5e-16	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000058_45	phrog_44	54.6	0.0000000000000031	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000058_45	UniRef90_A0A832QCU5	113.0	1.94e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000058_45	406124.ACPC01000020_gene3960	73.9	0.00000000000000816	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0000058_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0000058_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000058_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_46	PF11417,PF08209	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_47	K02086	42.8	0.0000000000045	dnaD; DNA replication protein	N/A
PHROG	UHGV-0000058_47	phrog_4016	55.9	8.8e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000058_47	1123299.AUKZ01000018_gene209	56.2	0.00000101	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0000058_47	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0000058_47	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0000058_47	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0000058_47	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0000058_47	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000058_49	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-0000058_50	phrog_2967	43.6	0.0000000000053	transcriptional regulator	transcription regulation
Pfam	UHGV-0000058_50	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0000058_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000058_50	PF12844,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_51	K07729	52.9	0.0000000000000078	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0000058_51	phrog_3	47.2	0.00000000000055	transcriptional repressor	transcription regulation
UniRef90	UHGV-0000058_51	UniRef90_A0A353JBB9	96.7	2.06e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0000058_51	1027396.LMOSA_9200	52.8	0.000000255	Transcriptional	N/A
PADLOC	UHGV-0000058_51	retron_type_VI_hth_cluster2_1	42.4	0.000000000012	N/A	Retron
Pfam	UHGV-0000058_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000058_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000058_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000058_53	K14059	179.2	0	int; integrase	N/A
PHROG	UHGV-0000058_53	phrog_1	180.2	0	integrase	integration and excision
UniRef90	UHGV-0000058_53	UniRef90_A0A843GV89	357.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0000058_53	908340.HMPREF9406_3938	141.0	9.08e-36	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0000058_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000058_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0000058_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A