UHGV-0005125 (vOTU-078872)

Viral Genome: UHGV-0005125

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0005125
vOTU ID	vOTU-078872
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_1595_length_58435_cov_15.868827_1
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	98.99 (High-quality)
Trimmed?	No
CheckV Viral Markers	12
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9751
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	40.47
Jumbo Phage?	No

Genome Content
Length (bps)	39,339
GC Content	50.95%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	46
CDS Density	96%
Average CDS Length (bps)	820.11
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0005125_2	UniRef90_R6J3S0	582.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0005125_2	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-0005125_2	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_3	phrog_263	90.8	7.7e-27	holin	lysis
UniRef90	UHGV-0005125_3	UniRef90_A0A316RBA3	156.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0005125_3	1121344.JHZO01000003_gene952	77.0	2.39e-17	SPP1 phage holin	N/A
Pfam	UHGV-0005125_3	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0005125_3	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0005125_3	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_4	phrog_4105	80.9	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0005125_4	397288.C806_00056	89.4	1.69e-21	N/A	N/A
UniRef90	UHGV-0005125_5	UniRef90_R6J123	108.0	4.18e-30	ATP synthase B chain	N/A
KOfam	UHGV-0005125_6	K24213	64.4	1.2e-18	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0005125_6	phrog_5073	55.6	1.8e-16	tail fiber protein	tail
UniRef90	UHGV-0005125_6	UniRef90_R6ISY1	353.0	0	Extracellular nuclease	N/A
eggNOG-mapper	UHGV-0005125_6	2754.EH55_03895	59.3	0.00000207	alpha-ribazole phosphatase activity	N/A
Pfam	UHGV-0005125_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0005125_6	COG0406	N/A	N/A	Broad specificity phosphatase PhoE	N/A
PHROG	UHGV-0005125_7	phrog_22978	2584.7	0	N/A	unknown function
UniRef90	UHGV-0005125_7	UniRef90_R6ILN9	5333.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0005125_7	1408437.JNJN01000039_gene389	159.0	2.15e-35	heme binding	N/A
Pfam	UHGV-0005125_7	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-0005125_7	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0005125_7	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-0005125_9	1203606.HMPREF1526_02741	54.7	0.00000805	N/A	N/A
PHROG	UHGV-0005125_11	phrog_511	408.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0005125_11	1410650.JHWL01000003_gene2827	248.0	0	N/A	N/A
structural_annotation	UHGV-0005125_11	PF11134,MF_01605,NF038128,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_12	phrog_12105	149.8	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0005125_12	1519439.JPJG01000060_gene1891	57.4	0.00000000727	N/A	N/A
PHROG	UHGV-0005125_14	phrog_1357	254.2	0	major head protein	head and packaging
UniRef90	UHGV-0005125_14	UniRef90_A0A1I0BH03	317.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-0005125_14	748224.HMPREF9436_02545	269.0	0	N/A	N/A
Pfam	UHGV-0005125_14	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0005125_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0005125_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_15	phrog_13908	379.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0005125_15	1410650.JHWL01000003_gene2831	108.0	7.29e-25	N/A	N/A
PHROG	UHGV-0005125_16	phrog_156	295.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0005125_16	1410650.JHWL01000003_gene2833	498.0	0	N/A	N/A
structural_annotation	UHGV-0005125_16	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0005125_17	K06909	152.6	2.8026e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005125_17	phrog_979	162.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0005125_17	UniRef90_R6IPR7	986.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0005125_17	1410650.JHWL01000003_gene2834	532.0	0	N/A	N/A
Pfam	UHGV-0005125_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0005125_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0005125_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_18	phrog_1206	45.9	0.0000000000000083	terminase small subunit	head and packaging
KOfam	UHGV-0005125_20	K01520	142.8	2.49992e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0005125_20	phrog_135	117.8	7.5e-35	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_20	UniRef90_R6ILQ3	258.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0005125_20	1282887.AUJG01000016_gene1113	149.0	2.84464e-43	N/A	N/A
Pfam	UHGV-0005125_20	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0005125_20	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0005125_20	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0005125_20	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_21	phrog_355	68.5	8.7e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_21	UniRef90_A0A396KGT7	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005125_21	97138.C820_00250	129.0	2.2e-37	N/A	N/A
Pfam	UHGV-0005125_21	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0005125_21	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_22	phrog_8684	82.7	7.8e-26	N/A	unknown function
UniRef90	UHGV-0005125_22	UniRef90_A0A7X7ECI6	93.2	6.63e-22	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0005125_22	742767.HMPREF9456_02048	87.0	2.88e-20	YopX protein	N/A
Pfam	UHGV-0005125_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0005125_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0005125_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
Pfam	UHGV-0005125_24	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0005125_26	K00390	45.8	3e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0005125_26	phrog_424	116.2	2.6e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0005125_26	UniRef90_R6RCD0	503.0	0	Putative phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0005125_26	397291.C804_05723	260.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0005125_26	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0005125_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0005125_26	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0005125_28	K01160	59.4	9.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0005125_28	phrog_140	129.7	1.6e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_28	UniRef90_A0A0L0WED4	128.0	1.77e-35	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0005125_28	1123263.AUKY01000072_gene2102	123.0	5.13e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0005125_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0005125_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0005125_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_30	phrog_2514	88.6	6.8e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_30	UniRef90_A0A6H1ZB78	84.0	6.85e-16	Putative replication protein	N/A
eggNOG-mapper	UHGV-0005125_30	428127.EUBDOL_01512	114.0	9.42e-28	DnaD domain protein	N/A
COG	UHGV-0005125_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0005125_30	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0005125_31	K03111	141.7	7.49975e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0005125_31	phrog_44	146.0	2.00386e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_31	UniRef90_R6JMM3	251.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0005125_31	718252.FP2_06770	156.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0005125_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0005125_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0005125_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0005125_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0005125_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_32	phrog_7566	115.4	2e-34	N/A	unknown function
UniRef90	UHGV-0005125_32	UniRef90_A0A8D9UHC0	68.6	0.000000000000378	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0005125_32	1007096.BAGW01000031_gene114	83.6	1.36e-19	N/A	N/A
PHROG	UHGV-0005125_33	phrog_72	71.7	1e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_33	UniRef90_UPI001F3F3E5C	119.0	4.1e-31	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0005125_33	1507.HMPREF0262_00432	87.8	2e-19	N/A	N/A
structural_annotation	UHGV-0005125_33	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_34	phrog_7838	225.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_34	UniRef90_A0A8D9UGW3	198.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0005125_34	742767.HMPREF9456_02052	166.0	0	N/A	N/A
structural_annotation	UHGV-0005125_34	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_35	phrog_253	132.1	3.3e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005125_35	UniRef90_R6J0Q7	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005125_35	1227360.C176_12583	88.2	6.03e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0005125_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0005125_35	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0005125_39	phrog_33952	212.0	0	N/A	unknown function
PHROG	UHGV-0005125_41	phrog_26314	119.2	9.5e-36	N/A	unknown function
KOfam	UHGV-0005125_42	K22300	48.3	0.00000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0005125_42	phrog_3	50.3	0.0000000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0005125_42	UniRef90_UPI001F201451	77.0	4.76e-17	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0005125_42	1321782.HMPREF1986_02244	62.4	0.00000000000575	Helix-turn-helix domain	N/A
Pfam	UHGV-0005125_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005125_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0005125_42	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0005125_43	K01356	104.0	2.4e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0005125_43	phrog_4	119.7	2.8e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0005125_43	UniRef90_A0A6N9NXR9	244.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0005125_43	938278.CAJO01000051_gene819	110.0	2.88e-27	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0005125_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0005125_43	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0005125_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0005125_43	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005125_44	756499.Desde_3141	61.6	0.0000000209	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0005125_44	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0005125_44	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0005125_46	K06400	337.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0005125_46	phrog_95	335.1	0	integrase	integration and excision
UniRef90	UHGV-0005125_46	UniRef90_A0A1Q6LBY2	864.0	0	Recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0005125_46	537013.CLOSTMETH_01697	419.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0005125_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0005125_46	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0005125_46	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0005125_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0005125_46	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A