UHGV-0006445 (vOTU-157800)

Viral Genome: UHGV-0006445

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0006445
vOTU ID	vOTU-157800
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-I-L_G_18_2610__NODE_976_length_67111_cov_5.231659_1
Associated Biosample	SAMEA4766357
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	81.68 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	15
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9799
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	39.07
Jumbo Phage?	No

Genome Content
Length (bps)	29,240
GC Content	41.53%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	36
CDS Density	93%
Average CDS Length (bps)	755.92
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0006445_1	K01449	84.6	1.6e-24	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0006445_1	phrog_17417	76.1	4.8e-22	N/A	unknown function
UniRef90	UHGV-0006445_1	UniRef90_A0A416INU5	240.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0006445_1	1121423.JONT01000004_gene1706	59.7	0.0000000326	Cell wall hydrolase	N/A
Pfam	UHGV-0006445_1	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0006445_1	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0006445_1	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_2	phrog_3584	153.7	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0006445_2	1235800.C819_02258	252.0	0	N/A	N/A
structural_annotation	UHGV-0006445_2	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0006445_3	K03469	47.9	0.00000000000024	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0006445_3	phrog_531	49.3	0.000000000000086	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006445_3	UniRef90_A0A3R6KTE4	256.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006445_3	643648.Slip_0653	80.1	4.94e-17	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0006445_3	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0006445_3	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0006445_3	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0006445_4	K03497	131.2	1.2e-38	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0006445_4	phrog_6218	201.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006445_4	UniRef90_A0A3R6P3N3	495.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0006445_4	411461.DORFOR_01144	249.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0006445_4	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0006445_4	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0006445_4	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0006445_4	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_5	phrog_17690	113.8	7.5e-34	N/A	unknown function
UniRef90	UHGV-0006445_5	UniRef90_A0A6L5XWF4	107.0	1.78e-27	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0006445_5	33035.JPJF01000123_gene2433	95.5	1.54e-23	N/A	N/A
KOfam	UHGV-0006445_6	K00571	95.1	7.3e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0006445_6	phrog_16	236.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006445_6	UniRef90_A0A3R6LJQ7	1662.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0006445_6	1298920.KI911353_gene2709	1379.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0006445_6	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0006445_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0006445_6	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0006445_6	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_7	phrog_874	169.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0006445_7	411468.CLOSCI_00298	179.0	0	N/A	N/A
structural_annotation	UHGV-0006445_7	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_8	phrog_21026	53.3	0.0000000000000034	N/A	unknown function
KOfam	UHGV-0006445_9	K03427	42.5	0.0000000000066	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0006445_9	phrog_5696	227.5	0	N/A	unknown function
UniRef90	UHGV-0006445_9	UniRef90_A0A3D5TAK3	245.0	0	Restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0006445_9	762376.AXYL_06819	129.0	1.67e-33	N-6 DNA Methylase	N/A
PADLOC	UHGV-0006445_9	MTase_I_00005	43.5	0.0000000000038	Type I methyltransferase	RM
Pfam	UHGV-0006445_9	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0006445_9	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0006445_9	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0006445_10	K04763	196.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0006445_10	phrog_1	160.1	0	integrase	integration and excision
UniRef90	UHGV-0006445_10	UniRef90_A0A6L5YHS5	486.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0006445_10	877411.JMMA01000002_gene827	212.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0006445_10	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0006445_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0006445_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0006445_10	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_11	phrog_355	93.6	1.5e-27	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0006445_11	UniRef90_A0A416INF8	130.0	1.43e-37	N/A	N/A
eggNOG-mapper	UHGV-0006445_11	55601.VANGNB10_cI1618c	77.4	3.55e-17	N/A	N/A
Pfam	UHGV-0006445_11	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0006445_11	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0006445_11	PF14359,TIGR02133,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0006445_12	UniRef90_A0A417WAJ1	149.0	2.38221e-44	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0006445_12	1235800.C819_02254	126.0	6.26e-36	HNH nucleases	N/A
structural_annotation	UHGV-0006445_13	NF011508	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_15	phrog_11237	62.1	9.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0006445_15	411461.DORFOR_01161	97.4	4.12e-24	N/A	N/A
UniRef90	UHGV-0006445_17	UniRef90_UPI001C1098AE	89.7	2.78e-22	chemotaxis protein	N/A
eggNOG-mapper	UHGV-0006445_17	1042156.CXIVA_01520	73.9	7.91e-17	N/A	N/A
structural_annotation	UHGV-0006445_17	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_18	phrog_5110	99.4	1.9e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0006445_18	UniRef90_A0A1C5LZF0	102.0	1.04e-25	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0006445_18	926561.KB900623_gene765	68.2	0.000000000000202	N/A	N/A
Pfam	UHGV-0006445_18	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0006445_18	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_19	phrog_9	244.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0006445_19	UniRef90_D4M588	798.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0006445_19	1232452.BAIB02000007_gene1629	491.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0006445_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0006445_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0006445_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0006445_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_20	phrog_12	75.7	4e-22	portal protein	head and packaging
UniRef90	UHGV-0006445_20	UniRef90_A0A844KEF3	348.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0006445_20	1232452.BAIB02000007_gene1627	288.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0006445_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0006445_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0006445_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0006445_21	K01358	138.5	5.99994e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0006445_21	phrog_94	207.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0006445_21	UniRef90_R7IG16	210.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0006445_21	1232452.BAIB02000007_gene1626	181.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0006445_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0006445_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0006445_21	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_22	phrog_10	58.0	2e-17	major head protein	head and packaging
UniRef90	UHGV-0006445_22	UniRef90_A0A3E3JY53	419.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0006445_22	1232452.BAIB02000007_gene1625	418.0	0	Phage capsid family	N/A
NCBIFam	UHGV-0006445_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0006445_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0006445_22	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_23	phrog_749	49.1	0.000000000000083	N/A	unknown function
UniRef90	UHGV-0006445_24	UniRef90_A0A7C6J040	82.0	1.02e-17	Phage head closure protein	N/A
structural_annotation	UHGV-0006445_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0006445_25	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_26	phrog_5	63.1	6.4e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0006445_26	UniRef90_R7FK52	127.0	1.47e-35	Phage protein HK97 gp10 family	N/A
NCBIFam	UHGV-0006445_26	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0006445_26	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_27	phrog_88	89.6	3e-26	major tail protein	tail
UniRef90	UHGV-0006445_27	UniRef90_A0A1Q9J4Y1	267.0	0	Phage tail protein	N/A
Pfam	UHGV-0006445_27	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0006445_27	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0006445_27	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_30	phrog_1533	497.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0006445_30	UniRef90_R7IG02	353.0	0	Phage tail tape measure protein TP901 family core region	N/A
eggNOG-mapper	UHGV-0006445_30	1121296.JONJ01000026_gene2163	316.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0006445_30	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0006445_30	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0006445_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0006445_31	phrog_33	79.2	8.3e-23	distal tail protein Dit	tail
UniRef90	UHGV-0006445_31	UniRef90_A0A358PXF7	83.6	5.03e-16	Phage tail protein	N/A
eggNOG-mapper	UHGV-0006445_31	936140.AEOT01000014_gene1365	73.2	0.000000000000633	Phage tail protein	N/A
COG	UHGV-0006445_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0006445_31	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0006445_32	phrog_1067	238.4	0	minor head protein	head and packaging
UniRef90	UHGV-0006445_32	UniRef90_A0A1Q9J4Z4	464.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0006445_32	508419.F8J176_9CAUD	188.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0006445_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0006445_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
PHROG	UHGV-0006445_33	phrog_19280	64.4	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0006445_33	1160721.RBI_I01572	67.0	0.00000000115	N/A	N/A
Pfam	UHGV-0006445_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0006445_34	phrog_199	88.1	8.7e-26	holin	lysis
UniRef90	UHGV-0006445_34	UniRef90_A0A3R6P3L6	253.0	0	Holin	N/A
eggNOG-mapper	UHGV-0006445_34	742740.HMPREF9474_02333	202.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0006445_34	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0006445_34	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0006445_34	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0006445_34	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0006445_35	K07273	164.5	0	acm; lysozyme	N/A
PHROG	UHGV-0006445_35	phrog_291	150.3	1.4013e-44	endolysin	lysis
UniRef90	UHGV-0006445_35	UniRef90_A0A1Q9J763	274.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0006445_35	877424.ATWC01000009_gene1193	162.0	7.12e-41	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0006445_35	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0006445_35	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0006445_35	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A