UHGV-0007220 (vOTU-065134)

Viral Genome: UHGV-0007220

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0007220
vOTU ID	vOTU-065134
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_J_18_1660__NODE_187_length_179274_cov_44.639051_1
Associated Biosample	SAMEA4765940
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	90.72 (High-quality)
Trimmed?	No
CheckV Viral Markers	13
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.97
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	42.37
Jumbo Phage?	No

Genome Content
Length (bps)	43,297
GC Content	28.55%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	73
CDS Density	88%
Average CDS Length (bps)	519.33
Total tRNA Genes	4
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0007220_2	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_4	phrog_372	216.6	0	tail protein	tail
UniRef90	UHGV-0007220_4	UniRef90_UPI0018E46574	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0007220_4	1507.HMPREF0262_00218	116.0	3.08e-24	tail collar domain protein	N/A
COG	UHGV-0007220_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0007220_4	PF05895,MF_04116,MF_00791,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_5	phrog_6616	74.3	1.1e-21	tail protein	tail
eggNOG-mapper	UHGV-0007220_5	658659.HMPREF0983_03295	82.0	0.000000000000311	N/A	N/A
structural_annotation	UHGV-0007220_6	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_8	phrog_58	130.1	1.6e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0007220_8	445972.ANACOL_01854	85.9	0.0000000000000316	tape measure	N/A
COG	UHGV-0007220_8	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0007220_9	phrog_59	138.5	2.50006e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_9	UniRef90_A0A2Z2GSW6	129.0	3.73e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0007220_9	1229751.R9QM99_9CAUD	118.0	2.78e-31	HNH endonuclease	N/A
PADLOC	UHGV-0007220_9	HEase_00016	92.2	1.1e-26	homing endonuclease	RM
Pfam	UHGV-0007220_9	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0007220_9	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0007220_9	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0007220_9	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0007220_10	246194.CHY_1662	56.6	0.00000112	lysine exporter protein (LysE YggA)	N/A
COG	UHGV-0007220_10	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
Pfam	UHGV-0007220_12	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0007220_12	PF16478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_13	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_14	PF08873,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0007220_15	UniRef90_UPI001D096349	76.3	0.0000000000000244	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0007220_15	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_17	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_18	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_19	phrog_1328	140.1	1.10002e-41	major head protein	head and packaging
UniRef90	UHGV-0007220_19	UniRef90_UPI00164DD2D5	348.0	0	N/A	N/A
eggNOG-mapper	UHGV-0007220_19	1203606.HMPREF1526_00325	210.0	0	N/A	N/A
Pfam	UHGV-0007220_19	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0007220_19	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_20	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_21	phrog_64	158.5	0	portal protein	head and packaging
UniRef90	UHGV-0007220_21	UniRef90_UPI001D06C00B	321.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0007220_21	1121866.AUGK01000003_gene1429	273.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0007220_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0007220_21	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_22	phrog_38	176.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0007220_22	UniRef90_UPI0013EC3644	107.0	6.72e-21	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0007220_22	428127.EUBDOL_01551	229.0	0	chromosome segregation	N/A
COG	UHGV-0007220_22	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_22	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_23	phrog_59	151.3	2.8026e-45	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_23	UniRef90_UPI001F1AF0A7	152.0	4.04975e-43	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0007220_23	679190.HMPREF0650_0103	134.0	5.05e-37	NUMOD4 motif	N/A
PADLOC	UHGV-0007220_23	HEase_00016	93.0	3.1e-27	homing endonuclease	RM
Pfam	UHGV-0007220_23	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0007220_23	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0007220_23	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0007220_23	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_24	K17081	156.3	0	PHB2; prohibitin 2	N/A
PHROG	UHGV-0007220_24	phrog_200	169.3	0	lipoprotein	other
UniRef90	UHGV-0007220_24	UniRef90_R6BHX9	208.0	0	PHB domain-containing protein	N/A
eggNOG-mapper	UHGV-0007220_24	649747.HMPREF0083_03347	156.0	1.56945e-43	HflC protein	N/A
Pfam	UHGV-0007220_24	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0007220_24	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0007220_24	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_25	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_26	phrog_301	68.2	1.2e-19	secreted protein	other
UniRef90	UHGV-0007220_26	UniRef90_UPI000B447155	56.2	0.0000000966	N/A	N/A
eggNOG-mapper	UHGV-0007220_26	1458670.W8NP19_9CAUD	67.4	0.000000000000642	N/A	N/A
structural_annotation	UHGV-0007220_26	PF07509,MF_00720,NF038397,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_29	phrog_20735	194.2	0	N/A	unknown function
UniRef90	UHGV-0007220_29	UniRef90_R5A140	349.0	0	RNA_ligase domain-containing protein	N/A
Pfam	UHGV-0007220_29	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-0007220_29	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_30	PF01381	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0007220_31	1280706.AUJE01000003_gene2269	59.3	0.0000000000317	N/A	N/A
PHROG	UHGV-0007220_33	phrog_3502	47.7	0.00000000000029	N/A	unknown function
UniRef90	UHGV-0007220_33	UniRef90_A0A355D930	50.4	0.00000148	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0007220_33	74546.PMT9312_1356	49.3	0.00000595	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0007220_33	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0007220_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0007220_33	PF01726,MF_00732,TIGR02944,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_36	phrog_4601	42.0	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0007220_39	PF05732,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_49	K03111	80.7	2.7e-23	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0007220_49	phrog_44	83.2	4.6e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_49	UniRef90_R5HKG1	132.0	8.41e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0007220_49	1541959.KQ51_01279	109.0	1.57e-29	Single-strand binding protein family	N/A
Pfam	UHGV-0007220_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0007220_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0007220_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0007220_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0007220_49	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_53	K14060	110.8	1.5e-32	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0007220_53	phrog_125	135.3	4.00001e-40	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_53	UniRef90_A0A3A9IGT8	116.0	7.23e-29	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0007220_53	1235835.C814_02364	114.0	8.11e-29	Resolvase, N terminal domain	N/A
Pfam	UHGV-0007220_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0007220_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0007220_53	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0007220_55	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_57	K03700	61.0	2.4e-17	recU; recombination protein U	N/A
PHROG	UHGV-0007220_57	phrog_843	98.5	5.4e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_57	UniRef90_A0A7K3ZIM8	136.0	6.54e-38	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0007220_57	1391647.AVSV01000003_gene1795	126.0	8.84e-35	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0007220_57	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0007220_57	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0007220_57	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_62	phrog_124	114.5	9.7e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_62	UniRef90_A0A482MHZ5	122.0	3.57e-30	Nucleotide binding protein	N/A
eggNOG-mapper	UHGV-0007220_62	279808.SH2384	80.5	0.00000000000000389	AAA domain	N/A
Pfam	UHGV-0007220_62	PF13479	N/A	N/A	AAA domain	AAA_24
PHROG	UHGV-0007220_63	phrog_59	140.6	5.5001e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_63	UniRef90_A0A3B8SUV1	124.0	2.88e-33	Endonuclease	N/A
eggNOG-mapper	UHGV-0007220_63	1121286.AUMT01000013_gene2588	115.0	1.26e-30	HNH endonuclease	N/A
PADLOC	UHGV-0007220_63	HEase_00016	91.7	1.2e-26	homing endonuclease	RM
Pfam	UHGV-0007220_63	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0007220_63	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0007220_63	PF07463	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_64	phrog_20113	65.5	7.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0007220_64	10736.A0A1P8CWZ3_BPPHT	59.3	0.000000263	N/A	N/A
dbAPIS	UHGV-0007220_64	APIS005	N/A	N/A	Gad1 forms an octameric web that encases the GajAB complex and inhibits DNA recognition and cleavage.	N/A
PHROG	UHGV-0007220_65	phrog_1218	53.3	4.4e-26	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_65	UniRef90_A0A2U1K0R2	80.1	0.00000000000013	PDDEXK_1 domain-containing protein	N/A
Pfam	UHGV-0007220_65	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0007220_65	PF12705,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_68	K17680	131.4	5.4e-39	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0007220_68	phrog_19	119.2	3.5e-35	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_68	UniRef90_W1U6W9	105.0	4.29e-21	DNA helicase	N/A
eggNOG-mapper	UHGV-0007220_68	1232453.BAIF02000057_gene1145	73.9	0.0000000000343	DNA replication initiation	N/A
Pfam	UHGV-0007220_68	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0007220_68	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0007220_68	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0007220_69	phrog_428	133.7	3.4e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0007220_69	UniRef90_A0A5D4KDX5	171.0	0	Alpha/beta hydrolase	N/A
eggNOG-mapper	UHGV-0007220_69	642492.Clole_1831	169.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0007220_69	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0007220_69	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0007220_69	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0007220_69	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0007220_69	PF13730,NF040939,COG3355	N/A	N/A	N/A	N/A
Pfam	UHGV-0007220_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0007220_72	PF01381,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0007220_73	K22299	72.2	1e-20	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0007220_73	phrog_8	81.7	1.1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0007220_73	UniRef90_UPI001B937D3C	75.9	0.00000000000000192	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0007220_73	1123308.KB904555_gene919	71.6	0.0000000000000253	Transcriptional	N/A
PADLOC	UHGV-0007220_73	retron_type_VI_hth_cluster2_1	50.2	0.000000000000049	N/A	Retron
Pfam	UHGV-0007220_73	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0007220_73	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0007220_73	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A