UHGV-0008397 (vOTU-081872)

Viral Genome: UHGV-0008397

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0008397
vOTU ID	vOTU-081872
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ__NODE_1_length_1120812_cov_548.029859_2
Associated Biosample	SAMEA4969165
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9552
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	47.27
Jumbo Phage?	No

Genome Content
Length (bps)	39,004
GC Content	31.18%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	81%
Average CDS Length (bps)	537.92
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0008397_1	K14059	105.2	1.1e-30	int; integrase	N/A
PHROG	UHGV-0008397_1	phrog_1	135.2	6.50001e-40	integrase	integration and excision
UniRef90	UHGV-0008397_1	UniRef90_R7NIV8	251.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0008397_1	1238184.CM001792_gene62	235.0	0	Phage integrase family	N/A
Pfam	UHGV-0008397_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008397_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0008397_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0008397_2	K14623	117.6	1.5e-34	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0008397_2	phrog_15286	305.8	0	N/A	unknown function
UniRef90	UHGV-0008397_2	UniRef90_A0A351SRQ2	372.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0008397_2	525255.HMPREF0077_0944	287.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0008397_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0008397_2	COG5380	N/A	N/A	Lipase chaperone LimK	N/A
structural_annotation	UHGV-0008397_2	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0008397_3	K22300	55.4	6.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0008397_3	phrog_8	50.4	0.000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008397_3	UniRef90_UPI001AE66811	61.6	0.0000000199	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008397_3	546275.FUSPEROL_00457	71.2	0.00000000000116	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0008397_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0008397_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0008397_4	UniRef90_A0A354WRF5	66.2	0.000000000001	N/A	N/A
eggNOG-mapper	UHGV-0008397_4	1215915.BN193_09250	56.2	0.0000000019	N/A	N/A
Pfam	UHGV-0008397_4	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0008397_4	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0008397_4	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_5	phrog_6058	65.7	4.8e-19	N/A	unknown function
UniRef90	UHGV-0008397_5	UniRef90_A0A3A9SV11	63.9	0.00000000000686	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008397_5	411468.CLOSCI_01465	76.6	1.18e-17	N/A	N/A
structural_annotation	UHGV-0008397_5	PF12728,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0008397_8	K02086	74.9	1.3e-21	dnaD; DNA replication protein	N/A
PHROG	UHGV-0008397_8	phrog_186	108.0	1.2e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008397_8	UniRef90_R7F2I8	150.0	2.61999e-40	DnaD and phage-associated domain	N/A
eggNOG-mapper	UHGV-0008397_8	546271.Selsp_1350	106.0	1.12e-23	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0008397_8	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0008397_8	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0008397_8	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0008397_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0008397_8	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0008397_9	K02314	121.3	7.8e-36	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0008397_9	phrog_19	172.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008397_9	UniRef90_A0A7K3Z8Y2	322.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0008397_9	1232446.BAIE02000002_gene817	185.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0008397_9	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0008397_9	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0008397_9	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_13	phrog_124	150.5	1.26117e-44	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008397_13	UniRef90_UPI0018C46309	355.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0008397_13	445972.ANACOL_00146	311.0	0	AAA domain	N/A
Pfam	UHGV-0008397_13	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0008397_13	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0008397_13	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008397_14	UniRef90_A0A7X5DCB3	149.0	1.8399e-42	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008397_14	718252.FP2_01050	104.0	2.76e-25	N/A	N/A
structural_annotation	UHGV-0008397_14	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0008397_16	K03111	40.1	0.000000000079	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008397_16	phrog_25370	49.2	0.000000000000059	N/A	unknown function
UniRef90	UHGV-0008397_16	UniRef90_UPI0016500453	48.1	0.00000206	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008397_16	334413.FMG_P0012	51.6	0.0000000979	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0008397_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0008397_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
KOfam	UHGV-0008397_17	K03111	47.1	0.00000000000053	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008397_17	phrog_44	47.6	0.00000000000045	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008397_17	UniRef90_R7F241	69.3	0.000000000000688	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008397_17	1189612.A33Q_1879	50.8	0.000000718	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0008397_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0008397_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008397_18	445972.ANACOL_00148	84.0	5.25e-18	N/A	N/A
structural_annotation	UHGV-0008397_18	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_21	phrog_2044	72.4	4.1e-21	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008397_21	UniRef90_E3DDU9	65.1	0.00000000000483	N/A	N/A
eggNOG-mapper	UHGV-0008397_21	634499.EpC_17520	65.5	0.000000000000571	N/A	N/A
structural_annotation	UHGV-0008397_21	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008397_24	PF20384,COG1862	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008397_25	UniRef90_A0A843GUM6	117.0	9.3e-33	Membrane lipoprotein lipid attachment site-containing protein	N/A
eggNOG-mapper	UHGV-0008397_25	1121865.OMW_01950	50.1	0.000000492	N/A	N/A
Pfam	UHGV-0008397_25	PF08139	N/A	N/A	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
structural_annotation	UHGV-0008397_25	PF18300,NF033216,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008397_26	PF10654	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008397_27	PF15456	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_29	phrog_3915	63.8	1.8e-18	N/A	unknown function
KOfam	UHGV-0008397_30	K07474	118.1	1.2e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0008397_30	phrog_51	133.2	1.6e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0008397_30	UniRef90_A0A350H3S5	212.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0008397_30	536232.CLM_2664	122.0	1.86e-32	Terminase small subunit	N/A
Pfam	UHGV-0008397_30	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0008397_30	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0008397_30	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008397_31	UniRef90_R5A0K2	927.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0008397_31	645991.Sgly_0335	481.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0008397_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0008397_31	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_32	phrog_533	232.6	0	portal protein	head and packaging
UniRef90	UHGV-0008397_32	UniRef90_R5A3Z5	856.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0008397_32	1117108.PAALTS15_13582	434.0	0	N/A	N/A
structural_annotation	UHGV-0008397_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_34	phrog_581	127.5	0	minor head protein	head and packaging
UniRef90	UHGV-0008397_34	UniRef90_R5A5Z0	854.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0008397_34	1151292.QEW_4396	274.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-0008397_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0008397_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008397_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_37	phrog_2303	82.8	5.5e-24	head scaffolding protein	head and packaging
structural_annotation	UHGV-0008397_37	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_38	phrog_422	235.5	0	major head protein	head and packaging
UniRef90	UHGV-0008397_38	UniRef90_W0U896	381.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0008397_38	1160721.RBI_II00538	381.0	0	N/A	N/A
structural_annotation	UHGV-0008397_38	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_41	phrog_541	91.6	6.3e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0008397_41	483218.BACPEC_01153	90.1	1.65e-21	N/A	N/A
PHROG	UHGV-0008397_42	phrog_8710	124.1	4.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0008397_42	1282664.H354_06676	75.5	4.06e-16	N/A	N/A
structural_annotation	UHGV-0008397_42	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_43	phrog_556	61.6	1.3e-17	minor head protein	head and packaging
UniRef90	UHGV-0008397_43	UniRef90_UPI00058FDD53	105.0	1.14e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0008397_43	742740.HMPREF9474_03509	99.8	2.45e-25	N/A	N/A
PHROG	UHGV-0008397_44	phrog_2595	57.0	3e-16	head-tail connector protein	connector
UniRef90	UHGV-0008397_44	UniRef90_UPI0016BCEC89	89.7	1.6e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0008397_44	1151292.QEW_2427	93.6	8.34e-23	N/A	N/A
Pfam	UHGV-0008397_44	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0008397_44	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_45	phrog_820	81.3	1e-23	major tail protein	tail
eggNOG-mapper	UHGV-0008397_45	1282664.H354_06691	108.0	3.43e-28	N/A	N/A
structural_annotation	UHGV-0008397_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_46	phrog_8300	70.8	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0008397_46	1507.HMPREF0262_01185	57.0	0.00000000462	N/A	N/A
structural_annotation	UHGV-0008397_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_47	phrog_8355	75.0	5.3e-22	N/A	unknown function
UniRef90	UHGV-0008397_47	UniRef90_UPI0009E34DBA	65.9	0.00000000000467	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0008397_47	1123263.AUKY01000051_gene1072	62.4	0.0000000000218	N/A	N/A
Pfam	UHGV-0008397_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0008397_48	phrog_1535	110.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0008397_48	UniRef90_R5A122	597.0	0	ETS domain-containing protein	N/A
eggNOG-mapper	UHGV-0008397_48	645991.Sgly_0352	262.0	0	SLT domain	N/A
COG	UHGV-0008397_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0008397_48	PF06791,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_49	phrog_1194	42.9	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-0008397_49	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_50	phrog_6616	66.6	2.3e-19	tail protein	tail
eggNOG-mapper	UHGV-0008397_50	1235796.C815_00906	64.3	0.0000000643	N/A	N/A
structural_annotation	UHGV-0008397_50	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_51	phrog_372	152.6	2.8026e-45	tail protein	tail
UniRef90	UHGV-0008397_51	UniRef90_UPI00067EAD4C	147.0	3.75e-35	N/A	N/A
eggNOG-mapper	UHGV-0008397_51	1211844.CBLM010000016_gene1479	142.0	3.88e-34	N/A	N/A
Pfam	UHGV-0008397_51	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0008397_51	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
Pfam	UHGV-0008397_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UniRef90	UHGV-0008397_57	UniRef90_A0A7C7EBX8	104.0	1.14e-23	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008397_57	693746.OBV_42500	94.4	1.53e-19	NlpC p60 family	N/A
Pfam	UHGV-0008397_57	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0008397_57	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0008397_57	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0008397_57	NF033742,NF038080,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_58	phrog_1281	133.6	7.6e-40	N/A	unknown function
UniRef90	UHGV-0008397_58	UniRef90_R7IBU8	245.0	0	Putative phage-associated protein	N/A
eggNOG-mapper	UHGV-0008397_58	1123288.SOV_3c08250	148.0	3.91004e-41	N/A	N/A
Pfam	UHGV-0008397_58	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0008397_58	COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0008397_59	phrog_8366	52.3	0.00000000000001	N/A	unknown function