UHGV-0009090 (vOTU-148273)

Viral Genome: UHGV-0009090

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0009090
vOTU ID	vOTU-148273
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_311282__flag_0__multi_38.3615__len_30799
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	76.97 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9789
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	50.05
Jumbo Phage?	No

Genome Content
Length (bps)	30,799
GC Content	48.36%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	41
CDS Density	94%
Average CDS Length (bps)	704.63
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0009090_2	phrog_3777	58.5	6.7e-17	N/A	unknown function
UniRef90	UHGV-0009090_2	UniRef90_A0A417F5N7	111.0	7.52e-30	N/A	N/A
eggNOG-mapper	UHGV-0009090_2	1235797.C816_01342	50.4	0.0000073	N/A	N/A
Pfam	UHGV-0009090_2	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0009090_2	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0009090_2	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_3	K03546	67.2	2.1e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0009090_3	phrog_1499	478.4	0	N/A	unknown function
UniRef90	UHGV-0009090_3	UniRef90_A0A174PNZ4	512.0	0	SMC domain-containing protein	N/A
eggNOG-mapper	UHGV-0009090_3	645991.Sgly_0320	504.0	0	domain protein	N/A
Pfam	UHGV-0009090_3	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
COG	UHGV-0009090_3	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0009090_3	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_4	phrog_21613	49.8	0.000000000000054	N/A	unknown function
eggNOG-mapper	UHGV-0009090_4	1007096.BAGW01000023_gene153	81.3	8.18e-17	N/A	N/A
PHROG	UHGV-0009090_5	phrog_1227	183.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_5	UniRef90_A0A7V6VUR0	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009090_5	861454.HMPREF9099_00347	160.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0009090_5	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0009090_5	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0009090_5	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_6	K03111	105.9	6.5e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009090_6	phrog_44	106.3	3.4e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_6	UniRef90_A0A2U1BEJ1	130.0	1.21e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009090_6	718252.FP2_05080	83.6	1.22e-18	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0009090_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009090_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009090_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009090_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009090_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_7	K02316	96.0	4.9e-28	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0009090_7	phrog_11992	94.1	8e-28	N/A	unknown function
UniRef90	UHGV-0009090_7	UniRef90_A0A174AHW7	100.0	2.07e-23	DNA primase	N/A
eggNOG-mapper	UHGV-0009090_7	97138.C820_02844	90.5	6.01e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-0009090_7	drt-cluster192	83.5	3.8e-24	DRT	DRT
Pfam	UHGV-0009090_7	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0009090_7	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0009090_7	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_8	phrog_8841	451.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_8	UniRef90_A0A174AHW4	430.0	0	Superfamily II helicase	N/A
eggNOG-mapper	UHGV-0009090_8	903814.ELI_3221	388.0	0	N/A	N/A
Pfam	UHGV-0009090_8	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0009090_8	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0009090_8	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_8	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_9	K17677	377.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0009090_9	phrog_16	239.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_9	UniRef90_UPI0011C70D97	572.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0009090_9	742738.HMPREF9460_02499	559.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0009090_9	mREase_IV_00005	110.6	1.5e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0009090_9	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0009090_9	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0009090_9	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0009090_9	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_10	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_12	K00560	83.8	2.1e-24	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-0009090_12	phrog_5131	77.1	2.4e-22	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_12	UniRef90_A0A7C6BQD6	224.0	0	Thymidylat_synt domain-containing protein	N/A
eggNOG-mapper	UHGV-0009090_12	545695.TREAZ_2832	209.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	N/A
Pfam	UHGV-0009090_12	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-0009090_12	COG0207	N/A	N/A	Thymidylate synthase	N/A
PHROG	UHGV-0009090_13	phrog_18716	166.9	0	N/A	unknown function
UniRef90	UHGV-0009090_13	UniRef90_A0A7X9BQA3	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009090_13	665959.HMPREF1013_00856	144.0	2.98477e-43	N/A	N/A
Pfam	UHGV-0009090_13	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0009090_13	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_14	K00390	70.0	3.5e-20	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0009090_14	phrog_424	153.3	1.4013e-45	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009090_14	UniRef90_R7EMI2	473.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0009090_14	1235800.C819_03827	395.0	0	N/A	N/A
PADLOC	UHGV-0009090_14	SspD_00001	92.0	6.8e-28	SspD	SSP
Pfam	UHGV-0009090_14	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0009090_14	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0009090_19	phrog_36	55.6	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009090_19	UniRef90_A0A7D6VSS6	56.6	0.000000239	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0009090_19	580331.Thit_1400	135.0	7.43e-39	N/A	N/A
structural_annotation	UHGV-0009090_19	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_20	phrog_144	80.2	2.6e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009090_20	UniRef90_A0A3C1H547	152.0	9.80909e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0009090_20	1219626.HMPREF1639_07400	107.0	1.84e-28	Endonuclease	N/A
Pfam	UHGV-0009090_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0009090_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0009090_20	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_21	phrog_83	90.1	1.8e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0009090_21	UniRef90_A0A3C1H500	140.0	1.73e-39	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0009090_21	1219626.HMPREF1639_07405	135.0	2.51e-38	phage terminase small subunit	N/A
Pfam	UHGV-0009090_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0009090_21	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0009090_21	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0009090_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_22	phrog_9	352.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009090_22	UniRef90_UPI00156E0D61	824.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0009090_22	1219626.HMPREF1639_07410	808.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0009090_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0009090_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0009090_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0009090_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_23	phrog_12	254.6	0	portal protein	head and packaging
UniRef90	UHGV-0009090_23	UniRef90_A0A2V2F814	487.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009090_23	447909.A6M949_9VIRU	359.0	0	Phage portal protein	N/A
Pfam	UHGV-0009090_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0009090_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0009090_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_24	phrog_16951	254.8	0	N/A	unknown function
UniRef90	UHGV-0009090_24	UniRef90_R7FCQ3	176.0	0	SWIM-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0009090_24	411473.RUMCAL_01235	180.0	0	N/A	N/A
structural_annotation	UHGV-0009090_24	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_25	phrog_10	132.9	1.5e-39	major head protein	head and packaging
UniRef90	UHGV-0009090_25	UniRef90_UPI001B81A864	316.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0009090_25	742738.HMPREF9460_04071	268.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0009090_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0009090_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0009090_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0009090_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_26	PF05135,TIGR01560	N/A	N/A	N/A	N/A
Pfam	UHGV-0009090_27	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0009090_27	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0009090_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_28	phrog_5	43.2	0.00000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0009090_28	UniRef90_A0A7C6PS93	75.5	0.00000000000000599	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0009090_28	1033744.CAEL01000029_gene1278	61.2	0.000000000299	N/A	N/A
structural_annotation	UHGV-0009090_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_29	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_30	phrog_2175	79.0	6.5e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-0009090_30	1219626.HMPREF1639_07450	202.0	0	N/A	N/A
structural_annotation	UHGV-0009090_30	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_31	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_32	phrog_23464	351.2	0	N/A	unknown function
UniRef90	UHGV-0009090_32	UniRef90_A0A1C6H5M9	199.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0009090_32	1378168.N510_03078	223.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-0009090_32	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0009090_32	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_33	phrog_33	41.7	0.000000000014	distal tail protein Dit	tail
UniRef90	UHGV-0009090_33	UniRef90_A0A416L6F4	73.2	0.00000000000334	MtfA protein	N/A
eggNOG-mapper	UHGV-0009090_33	411465.PEPMIC_00745	69.3	0.0000000000103	N/A	N/A
structural_annotation	UHGV-0009090_33	PF05709,PF11699,TIGR01633,NF009806,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_34	phrog_3558	341.6	0	tail protein	tail
UniRef90	UHGV-0009090_34	UniRef90_A0A3N0APH2	302.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0009090_34	1121866.AUGK01000006_gene890	298.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0009090_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0009090_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0009090_34	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0009090_35	phrog_372	129.3	3.3e-38	tail protein	tail
eggNOG-mapper	UHGV-0009090_35	552396.HMPREF0863_01449	111.0	1.95e-22	N/A	N/A
Pfam	UHGV-0009090_35	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0009090_35	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0009090_35	PF05895,MF_04116,MF_00791,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
KOfam	UHGV-0009090_36	K08640	91.0	1.6e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0009090_36	phrog_894	89.0	5.2e-26	endolysin	lysis
UniRef90	UHGV-0009090_36	UniRef90_UPI00195C71BF	104.0	1.42e-23	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0009090_36	1121324.CLIT_8c00600	99.8	2e-23	Peptidase M15A	N/A
Pfam	UHGV-0009090_36	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0009090_36	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009090_36	PF08291,COG3108	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009090_37	UniRef90_UPI001F485105	73.6	0.00000000000000279	branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0009090_37	1232453.BAIF02000013_gene3226	68.6	0.0000000000000474	N/A	N/A
PHROG	UHGV-0009090_38	phrog_263	99.2	2e-29	holin	lysis
UniRef90	UHGV-0009090_38	UniRef90_A0A316PDW2	94.0	1.41e-23	Phage holin	N/A
eggNOG-mapper	UHGV-0009090_38	272623.L82103	75.9	4.77e-17	SPP1 phage holin	N/A
Pfam	UHGV-0009090_38	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0009090_38	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0009090_38	PF04688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009090_39	UniRef90_A0A316PAA3	63.2	0.00000000000548	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0009090_39	1408423.JHYA01000005_gene1820	48.5	0.00000257	sequence-specific DNA binding	N/A
Pfam	UHGV-0009090_39	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0009090_39	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A