UHGV-0012748 (vOTU-080425)

Viral Genome: UHGV-0012748

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0012748
vOTU ID	vOTU-080425
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_2_2185__NODE_24_length_265652_cov_10.623338_1
Associated Biosample	SAMEA4766186
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	94.84 (High-quality)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9776
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	63.47
Jumbo Phage?	No

Genome Content
Length (bps)	37,306
GC Content	40.93%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	55
CDS Density	89%
Average CDS Length (bps)	604.31
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0012748_1	UniRef90_A0A3E5EGB8	154.0	0	Toxin-antitoxin system protein	N/A
eggNOG-mapper	UHGV-0012748_1	1256908.HMPREF0373_03511	168.0	0	N/A	N/A
Pfam	UHGV-0012748_1	PF19537	N/A	N/A	N/A	DUF6061
structural_annotation	UHGV-0012748_1	PF19537	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_2	K01185	156.8	0	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0012748_2	phrog_7	178.0	0	endolysin	lysis
UniRef90	UHGV-0012748_2	UniRef90_A0A6N3H7R7	397.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0012748_2	397291.C804_01109	150.0	3.54e-40	Phage lysozyme	N/A
Pfam	UHGV-0012748_2	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0012748_2	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
HAMAP	UHGV-0012748_2	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0012748_2	PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_3	phrog_199	59.8	3.6e-17	holin	lysis
UniRef90	UHGV-0012748_3	UniRef90_A0A414REB4	276.0	0	Holin	N/A
eggNOG-mapper	UHGV-0012748_3	1235799.C818_04239	122.0	1.76e-33	Bacteriophage holin family	N/A
Pfam	UHGV-0012748_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0012748_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0012748_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_6	phrog_9994	132.3	3e-39	N/A	unknown function
UniRef90	UHGV-0012748_6	UniRef90_A0A173RZM4	169.0	4.2039e-45	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0012748_6	1256908.HMPREF0373_00465	127.0	8.55e-31	N/A	N/A
PHROG	UHGV-0012748_7	phrog_538	117.3	0	minor tail protein	tail
eggNOG-mapper	UHGV-0012748_7	1256908.HMPREF0373_00466	246.0	0	N/A	N/A
Pfam	UHGV-0012748_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0012748_7	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_8	phrog_33	52.6	0.000000000000012	distal tail protein Dit	tail
UniRef90	UHGV-0012748_8	UniRef90_UPI0015709E93	145.0	1.76e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0012748_8	742723.HMPREF9477_00896	167.0	0	N/A	N/A
structural_annotation	UHGV-0012748_8	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_9	phrog_6900	187.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0012748_9	536233.CLO_1577	284.0	0	tape measure	N/A
COG	UHGV-0012748_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0012748_9	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_10	phrog_706	87.3	1.5e-25	N/A	unknown function
UniRef90	UHGV-0012748_10	UniRef90_A0A1C5VU91	158.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0012748_10	1539298.JO41_08145	91.3	9.42e-21	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0012748_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0012748_10	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012748_11	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_12	phrog_3099	49.2	0.0000000000001	N/A	unknown function
PHROG	UHGV-0012748_13	phrog_3266	66.9	2.7e-19	tail completion	connector
structural_annotation	UHGV-0012748_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_14	phrog_556	108.4	4.1e-32	minor head protein	head and packaging
UniRef90	UHGV-0012748_14	UniRef90_UPI00102FEF69	91.7	1.4e-21	minor capsid protein	N/A
eggNOG-mapper	UHGV-0012748_14	1462526.BN990_03879	87.0	1.53e-20	Minor capsid protein	N/A
Pfam	UHGV-0012748_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0012748_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_15	phrog_3366	50.3	0.000000000000015	N/A	unknown function
Pfam	UHGV-0012748_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0012748_15	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_16	phrog_541	55.8	7e-16	head-tail adaptor	connector
PHROG	UHGV-0012748_18	phrog_422	211.5	0	major head protein	head and packaging
UniRef90	UHGV-0012748_18	UniRef90_W0U896	285.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0012748_18	1235794.C811_01371	315.0	0	N/A	N/A
structural_annotation	UHGV-0012748_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_19	phrog_194	88.1	1.3e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0012748_19	UniRef90_A0A174GWW4	204.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0012748_19	742765.HMPREF9457_02126	133.0	8.88e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0012748_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0012748_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_21	phrog_581	268.8	0	minor head protein	head and packaging
UniRef90	UHGV-0012748_21	UniRef90_UPI00164C8416	625.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_21	1292035.H476_1017	216.0	0	N/A	N/A
Pfam	UHGV-0012748_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0012748_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012748_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_22	phrog_533	221.7	0	portal protein	head and packaging
UniRef90	UHGV-0012748_22	UniRef90_UPI00164B7587	781.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0012748_22	479437.Elen_2623	138.0	5.12e-33	phage minor capsid protein	N/A
structural_annotation	UHGV-0012748_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_23	K06909	54.4	0.0000000000000012	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0012748_23	phrog_2	69.9	5.8e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0012748_23	UniRef90_R7N5K9	870.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_23	1235790.C805_00040	535.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0012748_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0012748_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0012748_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_24	K07474	99.4	7e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0012748_24	phrog_2606	300.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0012748_24	UniRef90_UPI0015702ED4	422.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0012748_24	1304866.K413DRAFT_3033	206.0	0	terminase, small subunit	N/A
Pfam	UHGV-0012748_24	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0012748_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0012748_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0012748_24	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0012748_25	1202532.FF52_10173	72.4	0.000000000000262	N/A	N/A
Pfam	UHGV-0012748_25	PF20712	N/A	N/A	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
structural_annotation	UHGV-0012748_26	PF09855,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_28	K00558	224.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0012748_28	phrog_116	266.9	0	DNA methyltransferase	other
UniRef90	UHGV-0012748_28	UniRef90_A0A174GZ53	931.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0012748_28	1235800.C819_02255	705.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0012748_28	MTase_II_00020	113.0	2.7e-37	Type II methyltransferase	RM
Pfam	UHGV-0012748_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0012748_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0012748_28	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_30	phrog_424	69.2	5.5e-20	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0012748_30	UniRef90_A0A2H4JC51	435.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0012748_30	693746.OBV_43240	531.0	0	N/A	N/A
COG	UHGV-0012748_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0012748_30	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_33	phrog_874	176.6	0	N/A	unknown function
UniRef90	UHGV-0012748_33	UniRef90_A0A4P6LRJ9	199.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_33	411468.CLOSCI_00298	202.0	0	N/A	N/A
structural_annotation	UHGV-0012748_33	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_34	phrog_20593	87.2	1.3e-25	N/A	unknown function
UniRef90	UHGV-0012748_35	UniRef90_A0A415TX35	185.0	0	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_35	397291.C804_00903	63.2	0.000000000178	N/A	N/A
PHROG	UHGV-0012748_36	phrog_26384	40.5	0.000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0012748_36	476272.RUMHYD_03338	60.8	0.000000000981	N/A	N/A
PHROG	UHGV-0012748_37	phrog_21026	57.1	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0012748_39	411468.CLOSCI_01479	62.4	0.0000000000359	N/A	N/A
PHROG	UHGV-0012748_40	phrog_16304	155.9	0	N/A	unknown function
UniRef90	UHGV-0012748_40	UniRef90_A0A3R6H2J6	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012748_40	411490.ANACAC_00800	142.0	1.41e-38	N/A	N/A
Pfam	UHGV-0012748_40	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0012748_40	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_41	K01160	48.0	0.00000000000032	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0012748_41	phrog_1682	77.6	1.8e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012748_41	UniRef90_A0A6N3H631	232.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0012748_41	1399942.U3PDU0_9CAUD	97.8	2.28e-24	magnesium ion binding	N/A
structural_annotation	UHGV-0012748_41	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_42	phrog_373	191.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0012748_42	UniRef90_A0A412KFD2	391.0	0	Phage regulatory protein	N/A
eggNOG-mapper	UHGV-0012748_42	428127.EUBDOL_01529	192.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0012748_42	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0012748_42	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0012748_42	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0012748_42	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0012748_42	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_43	phrog_398	216.3	0	N/A	unknown function
UniRef90	UHGV-0012748_43	UniRef90_UPI00068C968F	295.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0012748_43	33035.JPJF01000122_gene2462	295.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0012748_43	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0012748_43	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_44	phrog_659	50.9	0.000000000000018	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0012748_44	UniRef90_A0A3R6H986	364.0	0	N/A	N/A
eggNOG-mapper	UHGV-0012748_44	33035.JPJF01000135_gene5082	284.0	0	N/A	N/A
Pfam	UHGV-0012748_44	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0012748_44	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0012748_46	PF21596,TIGR03081	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012748_48	UniRef90_UPI0015D1C8FF	109.0	1.24e-29	lectin-1	N/A
structural_annotation	UHGV-0012748_48	COG3296	N/A	N/A	N/A	N/A
Pfam	UHGV-0012748_49	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-0012748_49	PF13443,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0012748_51	UniRef90_A0A3B9CCY2	107.0	3.18e-29	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0012748_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0012748_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_52	K22299	73.9	3.2e-21	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0012748_52	phrog_8	82.9	5.5e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0012748_52	UniRef90_A0A3B9CD23	162.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0012748_52	1256908.HMPREF0373_00219	87.8	3.32e-21	sequence-specific DNA binding	N/A
PADLOC	UHGV-0012748_52	retron_type_VI_hth_cluster2_1	53.1	0.0000000000000092	N/A	Retron
Pfam	UHGV-0012748_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0012748_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0012748_52	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_53	phrog_87	81.1	1.1e-23	metallo-protease	other
UniRef90	UHGV-0012748_53	UniRef90_A0A3R6K8Y6	266.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_53	553973.CLOHYLEM_07298	166.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0012748_53	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0012748_53	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0012748_53	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0012748_54	phrog_1847	518.1	0	N/A	unknown function
UniRef90	UHGV-0012748_54	UniRef90_R9JJN1	493.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0012748_54	1235792.C808_05258	493.0	0	N/A	N/A
Pfam	UHGV-0012748_54	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0012748_54	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0012748_54	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0012748_54	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0012748_55	K14059	169.0	0	int; integrase	N/A
PHROG	UHGV-0012748_55	phrog_1	158.4	0	integrase	integration and excision
UniRef90	UHGV-0012748_55	UniRef90_UPI0004952FB5	392.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0012748_55	1095750.HMPREF9970_1688	334.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0012748_55	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0012748_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0012748_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0012748_55	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A