UHGV-0013136 (vOTU-138566)

Viral Genome: UHGV-0013136

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0013136
vOTU ID	vOTU-138566
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_D_21_1577__NODE_1839_length_45435_cov_4.759822
Associated Biosample	SAMEA4765862
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	78.97 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	19
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9758
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	30.49
Jumbo Phage?	No

Genome Content
Length (bps)	45,435
GC Content	41.60%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	65
CDS Density	97%
Average CDS Length (bps)	675.46
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013136_1	phrog_19111	72.7	3.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0013136_1	697281.Mahau_0594	54.7	0.00000108	N/A	N/A
structural_annotation	UHGV-0013136_1	PF01344,PF13854,TIGR03548,COG3055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_4	PF05606,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_5	phrog_1887	201.9	0	tail protein	tail
eggNOG-mapper	UHGV-0013136_5	574375.BAGA_05825	82.4	0.0000000000000684	bacterial-type flagellum-dependent cell motility	N/A
COG	UHGV-0013136_5	COG1344	N/A	N/A	Flagellin and related hook-associated protein FlgL	N/A
structural_annotation	UHGV-0013136_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_6	NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_7	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_8	K20282	50.9	0.000000000000006	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0013136_8	phrog_4211	199.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0013136_8	1291050.JAGE01000002_gene3296	192.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0013136_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0013136_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0013136_8	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0013136_8	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_10	phrog_7339	138.6	3.69999e-41	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_10	UniRef90_A0A7X9EDH9	329.0	0	Metallophos domain-containing protein	N/A
eggNOG-mapper	UHGV-0013136_10	1150474.JQJI01000006_gene784	108.0	1.22e-25	metallophosphoesterase	N/A
Pfam	UHGV-0013136_10	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0013136_10	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0013136_10	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_11	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_14	phrog_215	45.5	0.00000000000099	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0013136_14	UniRef90_UPI0001FAEB0C	64.7	0.000000111	Ig-like domain-containing protein	N/A
Pfam	UHGV-0013136_14	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0013136_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_14	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_16	PF09646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_18	TIGR02215	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_20	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_22	phrog_3313	68.3	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0013136_22	1151292.QEW_0632	65.9	0.0000000107	N/A	N/A
structural_annotation	UHGV-0013136_22	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013136_23	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_25	phrog_2739	87.0	2e-26	portal protein	head and packaging
structural_annotation	UHGV-0013136_25	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013136_27	1306174.JODP01000006_gene3223	56.6	0.00000019	N/A	N/A
Pfam	UHGV-0013136_27	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
PHROG	UHGV-0013136_28	phrog_3838	48.9	0.000000000000086	N/A	unknown function
Pfam	UHGV-0013136_28	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
COG	UHGV-0013136_29	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0013136_30	phrog_15503	61.7	3.9e-18	N/A	unknown function
UniRef90	UHGV-0013136_30	UniRef90_A0A218KCC8	126.0	5.42e-27	Putative terminase ATPase subunit	N/A
eggNOG-mapper	UHGV-0013136_30	1308863.U5J9B2_9CAUD	107.0	1.88e-21	N/A	N/A
structural_annotation	UHGV-0013136_30	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_32	phrog_154	56.1	5.4e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0013136_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013136_35	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
PHROG	UHGV-0013136_36	phrog_19106	163.8	0	N/A	unknown function
UniRef90	UHGV-0013136_36	UniRef90_A0A412EKN4	157.0	4.2039e-45	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0013136_36	658655.HMPREF0988_00875	130.0	1.33e-35	N/A	N/A
Pfam	UHGV-0013136_36	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0013136_36	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_38	K07455	175.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0013136_38	phrog_148	186.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_38	UniRef90_H1CAQ5	263.0	0	Phage RecT family recombinase	N/A
eggNOG-mapper	UHGV-0013136_38	1408437.JNJN01000039_gene372	259.0	0	RecT family	N/A
Pfam	UHGV-0013136_38	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0013136_38	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0013136_38	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0013136_38	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_39	phrog_9958	55.6	5.2e-16	N/A	unknown function
UniRef90	UHGV-0013136_39	UniRef90_UPI001E484A7B	67.8	0.000000000543	MazG-like family protein	N/A
eggNOG-mapper	UHGV-0013136_39	658655.HMPREF0988_00873	62.0	0.00000000502	N/A	N/A
PHROG	UHGV-0013136_40	phrog_674	106.7	1.8e-31	N/A	unknown function
UniRef90	UHGV-0013136_40	UniRef90_A0A6N7XHF2	75.5	0.00000000000344	N/A	N/A
eggNOG-mapper	UHGV-0013136_40	742740.HMPREF9474_03487	88.2	2.01e-17	N/A	N/A
Pfam	UHGV-0013136_40	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0013136_40	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_41	phrog_4400	302.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0013136_41	886882.PPSC2_p0514	178.0	0	N/A	N/A
dbAPIS	UHGV-0013136_41	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
structural_annotation	UHGV-0013136_41	PF01743,MF_00957,TIGR01942,COG0617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013136_46	665956.HMPREF1032_00140	90.5	1.13e-20	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0013136_46	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0013136_47	phrog_7168	88.5	7.7e-29	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_47	UniRef90_UPI0018AC8137	159.0	2.8026e-44	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0013136_47	1476973.JMMB01000007_gene2015	75.5	0.00000000000015	GIY-YIG type nucleases (URI domain)	N/A
PADLOC	UHGV-0013136_47	HEase_00030	41.3	0.000000000058	homing endonuclease	RM
Pfam	UHGV-0013136_47	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0013136_47	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-0013136_47	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0013136_47	PF05043	N/A	N/A	Mga helix-turn-helix domain	Mga
NCBIFam	UHGV-0013136_47	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0013136_47	PF19835,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_48	K00390	72.0	3.9e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0013136_48	phrog_424	116.4	2.1e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0013136_48	UniRef90_A0A7X3MFG0	298.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0013136_48	1280696.ATVY01000096_gene1971	258.0	0	N/A	N/A
Pfam	UHGV-0013136_48	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0013136_48	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0013136_48	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_50	phrog_17284	51.6	0.00000000000001	N/A	unknown function
UniRef90	UHGV-0013136_50	UniRef90_UPI001F434B4C	76.3	0.0000000000000853	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0013136_50	1123309.AQYB01000007_gene1896	71.6	0.00000000000405	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0013136_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0013136_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0013136_51	K00558	58.6	7.3e-17	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0013136_51	phrog_116	59.7	3.3e-17	DNA methyltransferase	other
UniRef90	UHGV-0013136_51	UniRef90_A0A350S1T1	98.2	4.57e-23	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0013136_51	929704.Myrod_0681	103.0	3.46e-24	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0013136_51	MTase_II_00174	78.1	2e-22	Type II methyltransferase	RM
Pfam	UHGV-0013136_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0013136_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0013136_52	UniRef90_A0A350S1T2	138.0	4.8e-39	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0013136_52	397290.C810_05213	55.5	0.000000699	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0013136_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0013136_53	phrog_434	143.6	1.3999e-42	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_53	UniRef90_A0A416P5E4	169.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0013136_53	742765.HMPREF9457_02105	157.0	1.4013e-45	YqaJ viral recombinase family	N/A
Pfam	UHGV-0013136_53	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0013136_53	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0013136_53	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0013136_53	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0013136_54	phrog_4973	63.7	2.5e-18	N/A	unknown function
UniRef90	UHGV-0013136_54	UniRef90_UPI00164C43FE	64.3	0.00000000000569	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0013136_54	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0013136_54	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_55	K00571	151.8	5.60519e-45	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0013136_55	phrog_67	136.5	5.20022e-42	DNA methyltransferase	other
UniRef90	UHGV-0013136_55	UniRef90_R6E215	246.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0013136_55	469596.HMPREF9488_00879	202.0	0	DNA methylase	N/A
PADLOC	UHGV-0013136_55	MTase_II_00157	123.0	8.4e-37	Type II methyltransferase	RM
Pfam	UHGV-0013136_55	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0013136_55	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0013136_55	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_56	K04763	145.7	4.30199e-43	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0013136_56	phrog_1	121.8	7.3e-36	integrase	integration and excision
UniRef90	UHGV-0013136_56	UniRef90_UPI00190E9EBC	180.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0013136_56	1304866.K413DRAFT_1672	176.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0013136_56	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0013136_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013136_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0013136_58	phrog_5968	146.9	6.30584e-44	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_58	UniRef90_A0A3D2DZZ3	192.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0013136_58	702450.CUW_0518	172.0	0	Phage replisome organizer N-terminal	N/A
Pfam	UHGV-0013136_58	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0013136_58	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0013136_58	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0013136_58	PF09681,TIGR01714,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0013136_59	K03111	120.6	2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013136_59	phrog_44	118.8	4.7e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013136_59	UniRef90_A0A3D4S8G3	114.0	5.62e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013136_59	717606.PaecuDRAFT_2240	93.2	5.98e-22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0013136_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013136_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013136_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013136_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013136_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013136_64	UniRef90_A0A3B9SF96	66.6	0.000000000000695	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0013136_64	1540257.JQMW01000013_gene774	51.2	0.000000108	N/A	N/A
Pfam	UHGV-0013136_64	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0013136_64	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013136_65	1163671.JAGI01000002_gene2856	53.9	0.0000000441	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0013136_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013136_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A