UHGV-0013230 (vOTU-044479)

Viral Genome: UHGV-0013230

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0013230
vOTU ID	vOTU-044479
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_B_22_1612__NODE_266_length_42213_cov_30.469693
Associated Biosample	SAMEA4765897
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9805
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	27.58
Jumbo Phage?	No

Genome Content
Length (bps)	42,163
GC Content	56.91%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	95%
Average CDS Length (bps)	711.96
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0013230_1	UniRef90_UPI001A9B9B76	153.0	1.4013e-45	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0013230_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0013230_1	PF00805	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_2	phrog_757	181.0	0	DNA methyltransferase	other
UniRef90	UHGV-0013230_2	UniRef90_A0A3A6EPW1	253.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0013230_2	748224.HMPREF9436_03069	244.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0013230_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0013230_2	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_3	phrog_111	157.5	0	DNA methyltransferase	other
UniRef90	UHGV-0013230_3	UniRef90_A0A2V2F8D8	204.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0013230_3	445972.ANACOL_03344	199.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0013230_3	oMTase_00015	172.9	0	orphan methyltransferase	RM
Pfam	UHGV-0013230_3	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0013230_3	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_9	phrog_22543	40.4	0.000000000029	N/A	unknown function
Pfam	UHGV-0013230_9	PF09297	N/A	N/A	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
eggNOG-mapper	UHGV-0013230_10	411470.RUMGNA_00214	70.5	0.00000000000326	N/A	N/A
Pfam	UHGV-0013230_10	PF04448	N/A	N/A	N/A	DUF551
dbAPIS	UHGV-0013230_10	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
Pfam	UHGV-0013230_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013230_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0013230_14	UniRef90_A0A847E3M6	48.1	0.00000238	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0013230_14	PF08681	N/A	N/A	N/A	DUF1778
NCBIFam	UHGV-0013230_14	NF041551.1	N/A	N/A	YlcI/YnfO family protein	N/A
COG	UHGV-0013230_14	COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013230_14	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_17	K06909	152.8	2.8026e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013230_17	phrog_979	136.6	6.39973e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0013230_17	UniRef90_A0A350H2H5	617.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0013230_17	1410650.JHWL01000003_gene2834	617.0	0	N/A	N/A
Pfam	UHGV-0013230_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013230_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013230_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_18	phrog_156	317.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0013230_18	1410650.JHWL01000003_gene2833	607.0	0	N/A	N/A
structural_annotation	UHGV-0013230_18	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_19	K07584	47.4	0.00000000000036	N/A	N/A
PHROG	UHGV-0013230_19	phrog_4478	48.9	0.000000000000066	peptidase	other
UniRef90	UHGV-0013230_19	UniRef90_A0A374AM72	50.8	0.00000698	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0013230_19	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0013230_19	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013230_19	PF04327,NF011122,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_20	phrog_13908	309.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0013230_20	1410650.JHWL01000003_gene2831	165.0	0	N/A	N/A
PHROG	UHGV-0013230_21	phrog_1357	275.6	0	major head protein	head and packaging
UniRef90	UHGV-0013230_21	UniRef90_A0A2V2GQW4	430.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0013230_21	748224.HMPREF9436_01399	345.0	0	N/A	N/A
Pfam	UHGV-0013230_21	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0013230_21	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0013230_21	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_22	phrog_15239	51.9	0.000000000000011	N/A	unknown function
PHROG	UHGV-0013230_23	phrog_12105	129.6	1.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0013230_23	1519439.JPJG01000060_gene1891	73.2	0.00000000000000586	N/A	N/A
PHROG	UHGV-0013230_24	phrog_511	219.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0013230_24	1410650.JHWL01000003_gene2827	345.0	0	N/A	N/A
structural_annotation	UHGV-0013230_24	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013230_25	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_26	phrog_372	165.0	0	tail protein	tail
UniRef90	UHGV-0013230_26	UniRef90_UPI001373A0FD	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013230_26	556261.HMPREF0240_01282	192.0	0	N/A	N/A
Pfam	UHGV-0013230_26	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0013230_26	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0013230_26	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013230_27	1410650.JHWL01000003_gene2815	141.0	2.42e-34	N/A	N/A
PHROG	UHGV-0013230_28	phrog_22978	1243.3	0	N/A	unknown function
UniRef90	UHGV-0013230_28	UniRef90_A0A1Y4WLF7	1051.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013230_28	1321782.HMPREF1986_00356	561.0	0	N/A	N/A
Pfam	UHGV-0013230_28	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UniRef90	UHGV-0013230_29	UniRef90_A0A3D5TE86	114.0	3.18e-31	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0013230_29	1235835.C814_01206	107.0	1.95e-29	N/A	N/A
PHROG	UHGV-0013230_31	phrog_1129	55.8	6.2e-16	holin	lysis
UniRef90	UHGV-0013230_31	UniRef90_UPI001D084907	117.0	9.64e-33	phage holin family protein	N/A
eggNOG-mapper	UHGV-0013230_31	665956.HMPREF1032_03272	103.0	6.61e-28	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0013230_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0013230_31	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_32	K01447	83.9	2.5e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0013230_32	phrog_35436	142.9	1.90016e-42	amidase	lysis
UniRef90	UHGV-0013230_32	UniRef90_A0A350TLR9	247.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0013230_32	1504823.CCMM01000008_gene1019	211.0	0	Ami_2	N/A
Pfam	UHGV-0013230_32	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0013230_32	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0013230_32	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0013230_32	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_37	K14059	158.3	0	int; integrase	N/A
PHROG	UHGV-0013230_37	phrog_1	159.4	0	integrase	integration and excision
UniRef90	UHGV-0013230_37	UniRef90_A0A3D3Y0G6	318.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0013230_37	693746.OBV_41260	222.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0013230_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013230_37	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0013230_37	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013230_39	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_41	K22300	51.9	0.000000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0013230_41	phrog_2967	47.2	0.00000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013230_41	UniRef90_A0A1C6J7L0	112.0	1.85e-29	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0013230_41	411471.SUBVAR_05818	81.6	2.84e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0013230_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013230_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013230_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013230_43	552398.HMPREF0866_03195	91.3	1.09e-21	N/A	N/A
PHROG	UHGV-0013230_50	phrog_21613	88.4	5.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0013230_50	1007096.BAGW01000023_gene153	198.0	0	N/A	N/A
PHROG	UHGV-0013230_51	phrog_1227	216.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013230_51	UniRef90_UPI00164E5A62	273.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0013230_51	1007096.BAGW01000023_gene152	272.0	0	N/A	N/A
Pfam	UHGV-0013230_51	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0013230_51	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0013230_51	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0013230_52	K03111	142.0	6.19934e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0013230_52	phrog_44	135.6	3.20001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013230_52	UniRef90_A0A6G3LY52	162.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0013230_52	1519439.JPJG01000082_gene432	157.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0013230_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0013230_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0013230_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0013230_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0013230_52	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_53	phrog_190	117.8	8.2e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013230_53	UniRef90_UPI000518F9A3	120.0	2.89e-33	N/A	N/A
eggNOG-mapper	UHGV-0013230_53	1236514.BAKL01000051_gene3708	96.7	1.69e-24	N/A	N/A
Pfam	UHGV-0013230_53	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0013230_53	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_54	phrog_15768	57.0	1.5e-17	N/A	unknown function
UniRef90	UHGV-0013230_54	UniRef90_R6RVQ1	95.9	4.47e-20	Chromosome segregation ATPases	N/A
eggNOG-mapper	UHGV-0013230_54	1121344.JHZO01000003_gene982	99.8	1.67e-22	N/A	N/A
AcrCatalog	UHGV-0013230_54	cluster_14472	70.5	4.51e-16	NA	N/A
Pfam	UHGV-0013230_54	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0013230_54	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0013230_56	phrog_7713	40.8	0.000000000027	N/A	unknown function
Pfam	UHGV-0013230_56	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide