UHGV-0014575 (vOTU-001510)

Viral Genome: UHGV-0014575

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0014575
vOTU ID	vOTU-001510
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_3571550__flag_3__multi_527.0121__len_43567
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9799
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	41.35
Jumbo Phage?	No

Genome Content
Length (bps)	43,440
GC Content	59.59%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	93%
Average CDS Length (bps)	722.09
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0014575_1	411483.FAEPRAA2165_01035	68.6	0.00000000021	N/A	N/A
PHROG	UHGV-0014575_2	phrog_22978	551.1	0	N/A	unknown function
UniRef90	UHGV-0014575_2	UniRef90_R5G452	669.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0014575_2	1410650.JHWL01000003_gene2814	572.0	0	N/A	N/A
Pfam	UHGV-0014575_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0014575_3	phrog_1493	73.1	3.9e-21	endolysin	lysis
UniRef90	UHGV-0014575_3	UniRef90_A0A1V5Q5W6	293.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0014575_3	1246484.D479_19733	82.4	0.00000000000000943	Ami_3	N/A
Pfam	UHGV-0014575_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0014575_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0014575_3	PF18342,PF01471,PF00877,NF038080,COG4991,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_4	phrog_1863	48.6	0.000000000000096	N/A	unknown function
UniRef90	UHGV-0014575_4	UniRef90_A0A841PT51	66.6	0.00000000000301	Flp pilus assembly protein TadB	N/A
eggNOG-mapper	UHGV-0014575_4	1121929.KB898684_gene1947	62.8	0.0000000000159	N/A	N/A
PHROG	UHGV-0014575_5	phrog_881	87.2	8.6e-26	holin	lysis
UniRef90	UHGV-0014575_5	UniRef90_A0A4Q7P349	112.0	4.72e-31	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0014575_5	742740.HMPREF9474_02251	106.0	1.18e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-0014575_5	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0014575_5	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_7	phrog_1271	58.9	1.5e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0014575_7	PF12855	N/A	N/A	ECL1/2/3 zinc binding proteins	Ecl1
PHROG	UHGV-0014575_8	phrog_59	132.2	2.1e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_8	UniRef90_A0A1T2P3R0	110.0	7.74e-27	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0014575_8	525282.HMPREF0391_10156	96.7	1.22e-22	HNH endonuclease	N/A
PADLOC	UHGV-0014575_8	HEase_00016	71.9	8.6e-21	homing endonuclease	RM
Pfam	UHGV-0014575_8	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0014575_8	PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0014575_12	K14059	229.2	0	int; integrase	N/A
PHROG	UHGV-0014575_12	phrog_1	210.1	0	integrase	integration and excision
UniRef90	UHGV-0014575_12	UniRef90_A0A1V5XHC9	156.0	1.87e-40	Transposase	N/A
eggNOG-mapper	UHGV-0014575_12	887929.HMP0721_1295	140.0	1.82e-35	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0014575_12	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0014575_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0014575_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0014575_12	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0014575_13	UniRef90_A0A1Q6SAI0	72.0	0.000000000000376	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0014575_13	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0014575_13	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
KOfam	UHGV-0014575_15	K22300	57.7	2.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0014575_15	phrog_8	66.7	4.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0014575_15	UniRef90_A0A385Q3I4	85.5	7.21e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0014575_15	428127.EUBDOL_01498	67.0	0.00000000000191	sequence-specific DNA binding	N/A
Pfam	UHGV-0014575_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014575_15	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0014575_16	UniRef90_UPI001379F2B5	80.1	2.56e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0014575_16	97139.C824_00056	67.4	0.0000000000000478	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0014575_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0014575_16	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014575_17	PF07878,COG3609	N/A	N/A	N/A	N/A
Pfam	UHGV-0014575_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-0014575_21	K07729	58.9	1.2e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0014575_21	phrog_3	54.3	0.0000000000000061	transcriptional repressor	transcription regulation
UniRef90	UHGV-0014575_21	UniRef90_A6LN24	55.8	0.0000000116	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-0014575_21	391009.Tmel_1478	55.8	0.00000000195	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0014575_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0014575_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0014575_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0014575_22	K07741	119.3	6.8e-35	antB; anti-repressor protein	N/A
PHROG	UHGV-0014575_22	phrog_130	242.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0014575_22	UniRef90_UPI00040C741F	319.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0014575_22	887325.HMPREF0381_0355	293.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0014575_22	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0014575_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0014575_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0014575_22	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014575_23	PF12728,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_25	phrog_5781	94.2	1.4e-27	N/A	unknown function
UniRef90	UHGV-0014575_25	UniRef90_A0A263VK03	87.0	3.78e-20	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0014575_25	1205683.CAKR01000002_gene2789	76.6	9.86e-17	N/A	N/A
Pfam	UHGV-0014575_25	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0014575_25	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0014575_25	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_27	phrog_434	287.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_27	UniRef90_A0A3D0Z7F8	245.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0014575_27	428125.CLOLEP_01823	241.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0014575_27	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0014575_27	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0014575_27	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0014575_27	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_28	phrog_23155	123.7	1.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0014575_28	350688.Clos_1293	104.0	1.53e-24	N/A	N/A
structural_annotation	UHGV-0014575_28	PF18897	N/A	N/A	N/A	N/A
Pfam	UHGV-0014575_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0014575_29	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0014575_30	K03700	90.5	2.4e-26	recU; recombination protein U	N/A
PHROG	UHGV-0014575_30	phrog_843	91.3	7.8e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_30	UniRef90_A0A2H4J2G2	77.8	0.00000000000000913	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0014575_30	1340434.AXVA01000013_gene296	61.2	0.00000000571	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0014575_30	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0014575_30	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
KOfam	UHGV-0014575_32	K00571	77.1	2.7e-22	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0014575_32	phrog_12862	164.2	0	N/A	unknown function
UniRef90	UHGV-0014575_32	UniRef90_A0A519CP02	177.0	0	Type II methyltransferase	N/A
eggNOG-mapper	UHGV-0014575_32	1474867.A0A076FIB3_9PHYC	164.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0014575_32	MTase_II_00037	167.9	0	Type II methyltransferase	RM
Pfam	UHGV-0014575_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0014575_32	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_34	phrog_22543	40.0	0.000000000069	N/A	unknown function
KOfam	UHGV-0014575_36	K03111	132.3	5.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0014575_36	phrog_44	117.6	1.2e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_36	UniRef90_R5B767	122.0	2.66e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0014575_36	887929.HMP0721_1845	112.0	6.35e-30	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0014575_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0014575_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0014575_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0014575_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0014575_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0014575_37	K03465	103.3	3.1e-30	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0014575_37	phrog_85	78.4	1.1e-22	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_37	UniRef90_A0A7X8ZAW9	140.0	4.69001e-41	FAD-dependent thymidylate synthase (Fragment)	N/A
eggNOG-mapper	UHGV-0014575_37	645991.Sgly_0494	135.0	1.52e-38	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0014575_37	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0014575_37	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
KOfam	UHGV-0014575_38	K03465	91.3	1.2e-26	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0014575_38	phrog_85	83.1	4e-24	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0014575_38	UniRef90_A0A136M6J8	92.4	1.1e-21	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-0014575_38	720554.Clocl_3035	98.2	2.93e-24	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0014575_38	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0014575_38	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0014575_38	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014575_44	COG4451	N/A	N/A	N/A	N/A
KOfam	UHGV-0014575_47	K06909	138.2	7.20001e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0014575_47	phrog_979	123.9	2.4e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0014575_47	UniRef90_A0A810Q5R0	603.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0014575_47	1410650.JHWL01000003_gene2834	602.0	0	N/A	N/A
Pfam	UHGV-0014575_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0014575_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0014575_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_48	phrog_156	342.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0014575_48	748224.HMPREF9436_01396	563.0	0	N/A	N/A
structural_annotation	UHGV-0014575_48	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0014575_49	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_50	phrog_13908	228.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0014575_50	1410650.JHWL01000003_gene2831	103.0	5.42e-23	N/A	N/A
PHROG	UHGV-0014575_51	phrog_1357	270.6	0	major head protein	head and packaging
UniRef90	UHGV-0014575_51	UniRef90_A0A316LK11	339.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0014575_51	748224.HMPREF9436_01399	320.0	0	N/A	N/A
Pfam	UHGV-0014575_51	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0014575_51	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0014575_51	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0014575_52	phrog_15239	80.6	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0014575_52	1507.HMPREF0262_03462	55.1	0.00000000405	N/A	N/A
PHROG	UHGV-0014575_53	phrog_12105	124.0	6.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-0014575_53	1226322.HMPREF1545_03850	61.6	0.000000000216	N/A	N/A
PHROG	UHGV-0014575_54	phrog_511	224.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0014575_54	1519439.JPJG01000060_gene1903	327.0	0	N/A	N/A
structural_annotation	UHGV-0014575_54	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0014575_55	1305708.M9Q2I5_9CAUD	77.8	0.0000000000105	peptidoglycan catabolic process	N/A
eggNOG-mapper	UHGV-0014575_56	1410650.JHWL01000003_gene2815	74.3	0.000000000000459	N/A	N/A