UHGV-0016289 (vOTU-042845)

Viral Genome: UHGV-0016289

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0016289
vOTU ID	vOTU-042845
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_A_18_1822__NODE_1629_length_43421_cov_76.273533
Associated Biosample	SAMEA4766059
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	6
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9769
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	8.6
Jumbo Phage?	No

Genome Content
Length (bps)	43,344
GC Content	54.03%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	89%
Average CDS Length (bps)	643.50
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016289_3	phrog_19458	296.5	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016289_3	UniRef90_UPI0010565CFE	241.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0016289_3	657322.FPR_26770	334.0	0	N/A	N/A
COG	UHGV-0016289_3	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-0016289_4	PF06531	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016289_5	PF18830	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_6	phrog_15863	81.2	1.2e-23	N/A	unknown function
UniRef90	UHGV-0016289_6	UniRef90_A0A1Y4A1A8	89.4	2.62e-19	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0016289_6	397288.C806_01234	83.6	9.76e-18	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0016289_6	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-0016289_7	UniRef90_UPI0018758D33	62.0	0.0000000000219	N/A	N/A
eggNOG-mapper	UHGV-0016289_7	693746.OBV_01760	48.5	0.000000796	N/A	N/A
Pfam	UHGV-0016289_7	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0016289_7	PF03869,NF040976,COG4453	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_10	K21523	51.9	6.2e-17	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0016289_10	phrog_2	82.8	6.2e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0016289_10	UniRef90_UPI001F401ABC	609.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0016289_10	1408437.JNJN01000002_gene1397	136.0	2.27e-32	Phage terminase large subunit	N/A
COG	UHGV-0016289_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016289_10	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_12	phrog_35275	66.6	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0016289_12	1226322.HMPREF1545_03846	65.1	0.00000000298	N/A	N/A
PHROG	UHGV-0016289_13	phrog_371	72.2	7.1e-21	major head protein	head and packaging
UniRef90	UHGV-0016289_13	UniRef90_UPI00164C0E21	104.0	5.07e-22	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0016289_13	1519439.JPJG01000060_gene1890	120.0	1.69e-28	N/A	N/A
structural_annotation	UHGV-0016289_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_15	phrog_156	233.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0016289_15	693746.OBV_23930	422.0	0	N/A	N/A
structural_annotation	UHGV-0016289_15	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_16	phrog_13046	48.1	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0016289_16	693746.OBV_23880	112.0	2.81e-28	N/A	N/A
structural_annotation	UHGV-0016289_16	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_17	phrog_3287	122.0	2e-36	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0016289_17	665956.HMPREF1032_03917	652.0	0	N/A	N/A
structural_annotation	UHGV-0016289_17	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_18	phrog_13589	45.2	0.00000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0016289_18	665956.HMPREF1032_03918	101.0	7.88e-22	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
eggNOG-mapper	UHGV-0016289_19	476272.RUMHYD_00002	86.7	0.0000000000000221	N/A	N/A
structural_annotation	UHGV-0016289_19	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_21	K02395	80.5	3.8e-23	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0016289_21	phrog_7698	162.6	0	endolysin	lysis
UniRef90	UHGV-0016289_21	UniRef90_A0A1C5V282	238.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-0016289_21	877414.ATWA01000019_gene2055	231.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0016289_21	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0016289_21	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0016289_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0016289_21	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016289_22	UniRef90_UPI00102F4BEE	52.0	0.00000219	CTP synthase	N/A
eggNOG-mapper	UHGV-0016289_22	1042156.CXIVA_01580	57.0	0.0000000082	N/A	N/A
PHROG	UHGV-0016289_23	phrog_13256	52.8	0.0000000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0016289_23	1226322.HMPREF1545_02800	53.1	0.00000000965	N/A	N/A
eggNOG-mapper	UHGV-0016289_25	1408437.JNJN01000060_gene452	288.0	0	heme binding	N/A
COG	UHGV-0016289_25	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0016289_26	K19666	41.9	0.000000000014	solR, cepR, tofR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR	N/A
Pfam	UHGV-0016289_26	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0016289_26	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0016289_26	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016289_29	UniRef90_A0A7M1RS47	60.5	0.00000000963	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0016289_29	1378168.N510_03079	81.3	1.49e-16	N/A	N/A
structural_annotation	UHGV-0016289_30	PF08281,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_32	phrog_9958	103.3	1.7e-30	N/A	unknown function
UniRef90	UHGV-0016289_32	UniRef90_UPI001D08A241	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016289_32	1160721.RBI_I01591	118.0	5.46e-31	N/A	N/A
structural_annotation	UHGV-0016289_32	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_33	K19779	52.1	0.00000000000001	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0016289_33	phrog_599	47.4	0.00000000000045	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0016289_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0016289_33	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0016289_33	PF14354,NF007260,COG3422	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_37	K01160	54.3	0.000000000000004	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0016289_37	phrog_34	58.9	1.1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016289_37	UniRef90_UPI0018ABA1B6	152.0	2.8026e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0016289_37	875454.BAEW01000002_gene491	110.0	1.09e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0016289_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0016289_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0016289_37	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_38	K00558	170.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0016289_38	phrog_116	191.9	0	DNA methyltransferase	other
UniRef90	UHGV-0016289_38	UniRef90_D4JYK0	414.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0016289_38	718252.FP2_16350	414.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0016289_38	oMTase_00004	269.1	0	orphan methyltransferase	RM
Pfam	UHGV-0016289_38	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0016289_38	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0016289_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0016289_38	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016289_40	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_41	phrog_16304	51.4	0.000000000000017	N/A	unknown function
UniRef90	UHGV-0016289_41	UniRef90_UPI001874F31C	121.0	4.83e-30	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0016289_41	447909.A6M985_9VIRU	54.7	0.00000529	calcium ion binding	N/A
Pfam	UHGV-0016289_41	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0016289_41	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0016289_41	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0016289_41	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_42	phrog_4973	64.5	1.4e-18	N/A	unknown function
UniRef90	UHGV-0016289_42	UniRef90_A0A3D3Y5F2	65.9	0.00000000000157	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016289_42	584708.Apau_1668	50.4	0.000000573	Helix-turn-helix domain	N/A
Pfam	UHGV-0016289_42	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0016289_42	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_43	K03111	136.2	3.9e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016289_43	phrog_44	143.7	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016289_43	UniRef90_UPI00187432A3	174.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016289_43	411471.SUBVAR_04646	169.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0016289_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016289_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016289_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016289_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016289_43	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_45	phrog_72	50.1	0.000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016289_45	UniRef90_UPI001F3F3E5C	85.5	1.12e-17	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0016289_45	445972.ANACOL_01825	117.0	1.21e-30	N/A	N/A
structural_annotation	UHGV-0016289_45	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_46	phrog_14970	250.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0016289_46	411470.RUMGNA_02193	208.0	0	double-strand break repair protein	N/A
COG	UHGV-0016289_46	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0016289_46	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_49	phrog_7964	172.5	0	N/A	unknown function
UniRef90	UHGV-0016289_49	UniRef90_A0A174CB23	130.0	3.38e-34	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-0016289_49	411470.RUMGNA_02189	122.0	3.19e-32	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0016289_49	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0016289_49	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0016289_49	NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016289_51	596152.DesU5LDRAFT_1910	87.4	1.47e-18	N/A	N/A
structural_annotation	UHGV-0016289_51	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0016289_56	K22300	46.3	0.00000000000097	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0016289_56	phrog_8	48.8	0.00000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016289_56	UniRef90_A0A810PZI0	71.6	0.00000000000000359	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016289_56	693746.OBV_25500	58.5	0.0000000000956	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0016289_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016289_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0016289_56	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016289_57	UniRef90_A0A810Q1T1	93.2	3e-22	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0016289_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016289_57	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0016289_57	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0016289_58	phrog_14556	42.2	0.0000000000085	N/A	unknown function
eggNOG-mapper	UHGV-0016289_58	1410653.JHVC01000032_gene1036	69.3	0.0000000000515	domain protein	N/A
COG	UHGV-0016289_58	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0016289_60	K14059	186.9	0	int; integrase	N/A
PHROG	UHGV-0016289_60	phrog_1	194.2	0	integrase	integration and excision
UniRef90	UHGV-0016289_60	UniRef90_A0A367GI93	308.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0016289_60	1507.HMPREF0262_00307	224.0	0	Phage integrase family	N/A
Pfam	UHGV-0016289_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0016289_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0016289_60	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A