UHGV-0017144 (vOTU-140544)

Viral Genome: UHGV-0017144

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0017144
vOTU ID	vOTU-140544
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_A_23_1707__NODE_365_length_19843_cov_7.919862
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	52.65 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	3
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9753
Viral Hallmark Genes (geNomad)	1
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	-6.24
Jumbo Phage?	No

Genome Content
Length (bps)	19,843
GC Content	34.43%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	45
CDS Density	84%
Average CDS Length (bps)	368.67
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0017144_6	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0017144_6	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0017144_7	K03111	112.3	6.9e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017144_7	phrog_44	99.7	3.4e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017144_7	UniRef90_UPI00098A2438	196.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017144_7	1408422.JHYF01000019_gene1422	89.0	5.45e-21	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0017144_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017144_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017144_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017144_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017144_7	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_8	phrog_3584	175.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017144_8	UniRef90_A0A1I5LZL1	151.0	2.09999e-41	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0017144_8	883156.HMPREF9282_01224	207.0	0	N/A	N/A
structural_annotation	UHGV-0017144_8	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017144_12	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017144_15	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_19	phrog_23950	90.0	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0017144_19	198467.NP92_02695	115.0	1.16e-32	N/A	N/A
UniRef90	UHGV-0017144_22	UniRef90_UPI00098BCE66	150.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017144_22	699218.HMPREF0889_0316	69.3	0.00000000000000802	N/A	N/A
structural_annotation	UHGV-0017144_22	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0017144_23	K22299	66.5	5.7e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0017144_23	phrog_8	70.7	2.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017144_23	UniRef90_J4RQU4	236.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0017144_23	479436.Vpar_0382	125.0	1.59e-35	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0017144_23	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0017144_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0017144_23	PF13560,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_24	phrog_20936	100.3	1e-29	N/A	unknown function
UniRef90	UHGV-0017144_24	UniRef90_UPI001F0B7502	130.0	3.4e-38	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-0017144_24	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_25	phrog_2158	184.0	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017144_25	UniRef90_A0A6N2ZUD5	630.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-0017144_25	568816.Acin_1264	257.0	0	Abi-like protein	N/A
PADLOC	UHGV-0017144_25	AbiD	119.9	2.4e-35	AbiD	Abi
Pfam	UHGV-0017144_25	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0017144_25	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0017144_25	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0017144_26	K14059	173.9	0	int; integrase	N/A
PHROG	UHGV-0017144_26	phrog_1	189.5	0	integrase	integration and excision
UniRef90	UHGV-0017144_26	UniRef90_A0A6N2ZQB7	753.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0017144_26	546273.VEIDISOL_01041	330.0	0	Phage integrase family	N/A
Pfam	UHGV-0017144_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017144_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017144_26	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_27	phrog_3243	46.2	0.0000000000004	N/A	unknown function
eggNOG-mapper	UHGV-0017144_27	941449.dsx2_0004	162.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0017144_28	phrog_2655	63.6	3.2e-18	excisionase	integration and excision
UniRef90	UHGV-0017144_28	UniRef90_A0A134CAQ8	128.0	1.15e-37	HTH_59 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017144_28	866776.HMPREF9321_1457	126.0	9.79e-38	N/A	N/A
Pfam	UHGV-0017144_28	PF20038	N/A	N/A	Helix-turn-helix domain	HTH_59
PHROG	UHGV-0017144_31	phrog_5867	145.8	1.90577e-43	endolysin	lysis
UniRef90	UHGV-0017144_31	UniRef90_D6KLI5	398.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0017144_31	1128111.HMPREF0870_01749	397.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0017144_31	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
structural_annotation	UHGV-0017144_31	MF_04111	N/A	N/A	N/A	N/A
PHROG	UHGV-0017144_32	phrog_27828	206.9	0	N/A	unknown function
UniRef90	UHGV-0017144_32	UniRef90_F5KZP5	122.0	1.12e-33	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0017144_32	1128111.HMPREF0870_01750	235.0	0	N/A	N/A
PHROG	UHGV-0017144_33	phrog_23091	263.1	0	N/A	unknown function
structural_annotation	UHGV-0017144_35	PF21611	N/A	N/A	N/A	N/A
KOfam	UHGV-0017144_36	K14059	127.9	1.3e-37	int; integrase	N/A
PHROG	UHGV-0017144_36	phrog_1	145.5	4.49817e-43	integrase	integration and excision
UniRef90	UHGV-0017144_36	UniRef90_A0A134C1R3	541.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0017144_36	883156.HMPREF9282_01261	293.0	0	Phage integrase family	N/A
Pfam	UHGV-0017144_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017144_36	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0017144_36	PF00589,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017144_43	PF09458,NF012201	N/A	N/A	N/A	N/A
KOfam	UHGV-0017144_44	K07497	56.3	5.7e-16	K07497; putative transposase	N/A
PHROG	UHGV-0017144_44	phrog_8463	99.3	2.5e-29	transposase	integration and excision
UniRef90	UHGV-0017144_44	UniRef90_S2ZMP8	603.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0017144_44	866776.HMPREF9321_0001	499.0	0	This gene contains a nucleotide ambiguity which may be the result of a sequencing error	N/A
Pfam	UHGV-0017144_44	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
Pfam	UHGV-0017144_44	PF00665	N/A	N/A	Integrase core domain	rve
COG	UHGV-0017144_44	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0017144_44	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017144_45	879309.HMPREF9199_1420	50.4	0.000000566	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0017144_45	COG3677	N/A	N/A	Transposase InsA	N/A