UHGV-0019621 (vOTU-114560)

Viral Genome: UHGV-0019621

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0019621
vOTU ID	vOTU-114560
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_C_6_1832__NODE_908_length_33708_cov_8.521662
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	51.18 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	5
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9814
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	18.81
Jumbo Phage?	No

Genome Content
Length (bps)	33,708
GC Content	40.33%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	44
CDS Density	90%
Average CDS Length (bps)	689.32
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019621_1	K04763	163.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0019621_1	phrog_1	122.0	6.6e-36	integrase	integration and excision
UniRef90	UHGV-0019621_1	UniRef90_A0A349YQG5	169.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0019621_1	679935.Alfi_1809	145.0	2.98e-40	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019621_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019621_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0019621_1	PF00589,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019621_2	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019621_3	476272.RUMHYD_01963	99.8	5.19e-24	N/A	N/A
structural_annotation	UHGV-0019621_4	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_5	phrog_443	51.6	0.000000000000025	holin	lysis
UniRef90	UHGV-0019621_5	UniRef90_A0A1I5VN65	97.4	3.13e-25	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0019621_5	1469948.JPNB01000002_gene3855	89.7	5.44e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0019621_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0019621_5	PF16945	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019621_6	476272.RUMHYD_01968	202.0	0	N/A	N/A
structural_annotation	UHGV-0019621_6	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_7	phrog_36112	152.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0019621_7	476272.RUMHYD_01969	167.0	0	N/A	N/A
structural_annotation	UHGV-0019621_7	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_9	phrog_28918	161.9	0	N/A	unknown function
UniRef90	UHGV-0019621_9	UniRef90_A0A0F0C7Q9	154.0	8.71e-34	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-0019621_9	397290.C810_01419	339.0	0	Transglycosylase SLT domain	N/A
COG	UHGV-0019621_9	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0019621_10	phrog_1194	75.3	6.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019621_10	1235790.C805_00088	118.0	2.43e-32	N/A	N/A
Pfam	UHGV-0019621_10	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0019621_10	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0019621_11	K13023	67.6	2.5e-20	CPN2; carboxypeptidase N regulatory subunit	N/A
PHROG	UHGV-0019621_11	phrog_18190	110.7	2.5e-33	N/A	unknown function
UniRef90	UHGV-0019621_11	UniRef90_UPI000E4C0A8F	1618.0	0	bacterial Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0019621_11	428125.CLOLEP_02759	129.0	4.31e-27	pathogenesis	N/A
Pfam	UHGV-0019621_11	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-0019621_11	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0019621_11	COG0683	N/A	N/A	ABC-type branched-chain amino acid transport system, periplasmic component	N/A
structural_annotation	UHGV-0019621_11	PF13306,PF07523,PF05113,NF033848,NF040978,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019621_13	476272.RUMHYD_00002	114.0	5.68e-23	N/A	N/A
PHROG	UHGV-0019621_14	phrog_9589	69.7	3.9e-20	endolysin	lysis
UniRef90	UHGV-0019621_14	UniRef90_A0A6N9LGV5	458.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0019621_14	1123075.AUDP01000020_gene1533	321.0	0	pathogenesis	N/A
Pfam	UHGV-0019621_14	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0019621_14	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0019621_14	PF08230,PF19087	N/A	N/A	N/A	N/A
KOfam	UHGV-0019621_15	K14059	99.1	6.4e-29	int; integrase	N/A
PHROG	UHGV-0019621_15	phrog_1	122.7	3.5e-36	integrase	integration and excision
UniRef90	UHGV-0019621_15	UniRef90_A0A6L8SXX0	717.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0019621_15	1235792.C808_05256	363.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019621_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019621_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019621_15	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_16	phrog_8545	61.5	1.2e-17	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019621_16	UniRef90_UPI001C0EAFDF	203.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0019621_16	1304866.K413DRAFT_0836	164.0	0	tRNA_anti-like	N/A
Pfam	UHGV-0019621_16	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0019621_16	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0019621_17	K18830	63.7	2.9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0019621_17	phrog_8	52.5	0.0000000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019621_17	UniRef90_R5GZQ0	136.0	3.38e-39	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0019621_17	748224.HMPREF9436_01444	129.0	1.31e-36	N/A	N/A
PADLOC	UHGV-0019621_17	retron_type_VI_hth_cluster2_1	46.0	0.0000000000002	N/A	Retron
Pfam	UHGV-0019621_17	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0019621_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019621_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019621_18	UniRef90_A0A3A6C2Z2	74.7	1.43e-16	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019621_18	610130.Closa_1362	72.0	2.8e-16	Helix-turn-helix domain	N/A
Pfam	UHGV-0019621_18	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0019621_18	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0019621_18	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_21	phrog_5070	167.3	0	N/A	unknown function
UniRef90	UHGV-0019621_21	UniRef90_A0A285PUH1	127.0	5.09e-33	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0019621_21	478749.BRYFOR_05427	114.0	5.12e-29	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0019621_21	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0019621_21	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-0019621_22	phrog_6058	54.6	7.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0019621_22	742733.HMPREF9469_05094	73.2	0.00000000000000134	N/A	N/A
AcrCatalog	UHGV-0019621_23	cluster_17974	60.1	0.00000000000000106	NA	N/A
structural_annotation	UHGV-0019621_26	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019621_27	UniRef90_R6RDX0	78.6	7.47e-18	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0019621_28	phrog_2872	164.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019621_28	UniRef90_A0A8F2J9K2	298.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0019621_28	1304866.K413DRAFT_0827	224.0	0	AAA domain	N/A
Pfam	UHGV-0019621_28	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0019621_28	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_30	phrog_18107	122.4	3.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0019621_30	476272.RUMHYD_02831	186.0	0	N/A	N/A
structural_annotation	UHGV-0019621_30	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_31	phrog_3490	111.2	8.2e-33	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019621_31	UniRef90_A0A173R9N6	281.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019621_31	476272.RUMHYD_02832	281.0	0	ERCC4 domain	N/A
Pfam	UHGV-0019621_31	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0019621_31	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0019621_31	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_32	phrog_1313	379.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019621_32	UniRef90_UPI001655DAE1	702.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-0019621_32	500632.CLONEX_03568	303.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0019621_32	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-0019621_32	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-0019621_32	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0019621_32	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0019621_32	PF05272,PF09250,PF08708,MF_00016,NF011296,COG5545	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019621_34	UniRef90_A0A6L8SWV5	174.0	0	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0019621_34	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0019621_34	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0019621_34	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_36	phrog_17690	128.8	1.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-0019621_36	476272.RUMHYD_03925	169.0	0	N/A	N/A
KOfam	UHGV-0019621_37	K00390	98.1	7.2e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0019621_37	phrog_424	132.4	2.8e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019621_37	UniRef90_A0A412EKX4	548.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0019621_37	1232452.BAIB02000007_gene1640	417.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0019621_37	BrxP_00001	68.6	6.2e-21	BrxP	BREX
Pfam	UHGV-0019621_37	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0019621_37	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019621_37	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019621_38	NF041197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019621_40	476272.RUMHYD_01751	48.1	0.00000901	N/A	N/A
AcrCatalog	UHGV-0019621_40	cluster_11670	43.9	0.0000000156	NA	N/A
PHROG	UHGV-0019621_42	phrog_20593	52.3	0.000000000000004	N/A	unknown function
AcrCatalog	UHGV-0019621_42	cluster_27421	31.6	0.000374	NA	N/A
PHROG	UHGV-0019621_43	phrog_8684	103.7	8.7e-31	N/A	unknown function
UniRef90	UHGV-0019621_43	UniRef90_A0A3A6GQT2	246.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0019621_43	457412.RSAG_01162	97.4	8.08e-24	YopX protein	N/A
Pfam	UHGV-0019621_43	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0019621_43	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0019621_43	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0019621_44	phrog_23224	94.7	1.1e-27	DNA methyltransferase	other
UniRef90	UHGV-0019621_44	UniRef90_A0A3A6GQN4	268.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0019621_44	411901.BACCAC_01192	139.0	2.63e-39	DNA methylase	N/A
PADLOC	UHGV-0019621_44	MTase_II_00172	52.5	0.000000000000013	Type II methyltransferase	RM
COG	UHGV-0019621_44	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0019621_44	NF010253,COG0863	N/A	N/A	N/A	N/A