UHGV-0019888 (vOTU-031464)

Viral Genome: UHGV-0019888

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0019888
vOTU ID	vOTU-031464
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_M_8_1180__NODE_1553_length_35690_cov_204.268413
Associated Biosample	SAMEA4765639
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	83.22 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.974
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	1.63
Jumbo Phage?	No

Genome Content
Length (bps)	35,690
GC Content	52.70%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	50
CDS Density	88%
Average CDS Length (bps)	630.66
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019888_1	phrog_4433	229.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0019888_1	665950.HMPREF1025_01373	124.0	2.54e-32	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0019888_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0019888_1	NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-0019888_6	K22300	63.3	5.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0019888_6	phrog_8	49.5	0.000000000000098	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019888_6	UniRef90_G4KQB4	79.7	2.02e-18	Putative Xre family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019888_6	693746.OBV_25500	79.7	3.38e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0019888_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019888_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0019888_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_7	phrog_8	47.0	0.00000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019888_7	UniRef90_UPI001966F1BB	82.4	8.25e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0019888_7	1378168.N510_01712	72.0	0.000000000000098	N/A	N/A
Pfam	UHGV-0019888_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0019888_7	PF01381,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_9	phrog_14556	48.7	0.00000000000007	N/A	unknown function
eggNOG-mapper	UHGV-0019888_9	1120998.AUFC01000015_gene1569	79.7	0.00000000000000283	competence protein COMEC	N/A
COG	UHGV-0019888_9	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0019888_11	K14059	144.6	1.19951e-42	int; integrase	N/A
PHROG	UHGV-0019888_11	phrog_1	140.5	1.49995e-41	integrase	integration and excision
UniRef90	UHGV-0019888_11	UniRef90_UPI0018989279	402.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0019888_11	1235798.C817_02938	77.4	0.000000000000449	Phage integrase family	N/A
Pfam	UHGV-0019888_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019888_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019888_11	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_13	phrog_19458	292.1	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019888_13	UniRef90_UPI0010565CFE	229.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0019888_13	657322.FPR_26770	337.0	0	N/A	N/A
COG	UHGV-0019888_13	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0019888_15	1160721.RBI_I00206	59.7	0.0000000000233	N/A	N/A
structural_annotation	UHGV-0019888_15	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_16	phrog_15863	72.3	5.9e-21	N/A	unknown function
UniRef90	UHGV-0019888_16	UniRef90_UPI0018766E78	182.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0019888_16	397288.C806_01234	79.0	5.74e-16	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0019888_16	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-0019888_17	UniRef90_UPI0018758D33	48.5	0.00000464	N/A	N/A
structural_annotation	UHGV-0019888_17	PF03869,NF010256	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019888_18	1125712.HMPREF1316_1524	51.6	0.00000578	N/A	N/A
PHROG	UHGV-0019888_19	phrog_774	50.3	0.000000000000051	N/A	unknown function
eggNOG-mapper	UHGV-0019888_19	1042156.CXIVA_01820	62.0	0.0000000000184	N/A	N/A
KOfam	UHGV-0019888_20	K21523	53.6	7e-16	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0019888_20	phrog_2	88.2	1.3e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0019888_20	UniRef90_UPI001F401ABC	600.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0019888_20	1232449.BAHV02000016_gene1824	136.0	3.14e-32	N/A	N/A
COG	UHGV-0019888_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019888_20	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_23	phrog_35275	66.8	2.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0019888_23	1226322.HMPREF1545_03846	67.8	0.000000000375	N/A	N/A
PHROG	UHGV-0019888_24	phrog_371	74.2	1.4e-21	major head protein	head and packaging
eggNOG-mapper	UHGV-0019888_24	1226322.HMPREF1545_03848	136.0	1.64e-34	N/A	N/A
structural_annotation	UHGV-0019888_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_26	phrog_156	231.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0019888_26	693746.OBV_23930	453.0	0	N/A	N/A
structural_annotation	UHGV-0019888_26	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_27	phrog_13046	47.5	0.00000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0019888_27	693746.OBV_23880	127.0	6e-34	N/A	N/A
structural_annotation	UHGV-0019888_27	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_28	phrog_3287	130.3	1.2e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0019888_28	665956.HMPREF1032_03917	662.0	0	N/A	N/A
structural_annotation	UHGV-0019888_28	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019888_29	665956.HMPREF1032_03918	164.0	0	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
NCBIFam	UHGV-0019888_31	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0019888_31	NF040910	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019888_32	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019888_33	476272.RUMHYD_00002	81.6	0.000000000000406	N/A	N/A
KOfam	UHGV-0019888_35	K19304	111.4	1e-32	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0019888_35	phrog_10030	77.8	4.5e-23	tail length tape measure protein	tail
UniRef90	UHGV-0019888_35	UniRef90_UPI0019599082	279.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0019888_35	1122137.AQXF01000004_gene1863	94.4	1.36e-19	COG0739 Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-0019888_35	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0019888_35	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0019888_35	PF01551,NF040883	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019888_36	UniRef90_UPI00102F4BEE	56.2	0.0000000498	CTP synthase	N/A
eggNOG-mapper	UHGV-0019888_36	1280671.AUJH01000012_gene3136	63.9	0.0000000000182	N/A	N/A
PHROG	UHGV-0019888_37	phrog_13256	53.3	0.0000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0019888_37	1226322.HMPREF1545_00132	50.8	0.000000157	N/A	N/A
eggNOG-mapper	UHGV-0019888_39	1408437.JNJN01000060_gene452	294.0	0	heme binding	N/A
COG	UHGV-0019888_39	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
Pfam	UHGV-0019888_40	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0019888_40	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0019888_40	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019888_43	1378168.N510_03079	85.5	3.93e-18	N/A	N/A
structural_annotation	UHGV-0019888_44	PF08281,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_45	phrog_924	49.4	0.000000000000064	N/A	unknown function
UniRef90	UHGV-0019888_45	UniRef90_A0A6A8VJ88	61.2	0.000000000668	N/A	N/A
Pfam	UHGV-0019888_45	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0019888_45	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0019888_47	phrog_9958	97.4	1.1e-28	N/A	unknown function
UniRef90	UHGV-0019888_47	UniRef90_UPI001D08A241	139.0	3.59e-38	N/A	N/A
eggNOG-mapper	UHGV-0019888_47	1160721.RBI_I01591	124.0	2.1e-33	N/A	N/A
structural_annotation	UHGV-0019888_47	PF19789	N/A	N/A	N/A	N/A