UHGV-0020366 (vOTU-066043)

Viral Genome: UHGV-0020366

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0020366
vOTU ID	vOTU-066043
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-A-D_H_2_1640__NODE_1890_length_48093_cov_5.394577
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	15
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9656
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	19.54
Jumbo Phage?	No

Genome Content
Length (bps)	48,093
GC Content	27.15%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	82
CDS Density	88%
Average CDS Length (bps)	515.16
Total tRNA Genes	6
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020366_1	K19304	102.0	1.3e-31	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0020366_1	phrog_7767	72.5	4e-21	metallo-endopeptidase	other
UniRef90	UHGV-0020366_1	UniRef90_R7MHG2	110.0	5.25e-26	Peptidoglycan DL-endopeptidase CwlO	N/A
eggNOG-mapper	UHGV-0020366_1	1094466.KQS_13630	77.4	0.000000000000189	peptidase	N/A
Pfam	UHGV-0020366_1	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0020366_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0020366_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0020366_1	PF01551,PF01476,MF_02014,NF040883,TIGR02899,COG0739,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_2	phrog_13256	49.0	0.000000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0020366_2	883114.HMPREF9709_01177	54.7	0.00000000243	N/A	N/A
eggNOG-mapper	UHGV-0020366_3	508419.F8J177_9CAUD	49.7	0.00000306	N/A	N/A
PHROG	UHGV-0020366_6	phrog_6616	54.3	0.0000000000000012	tail protein	tail
UniRef90	UHGV-0020366_6	UniRef90_R6H354	105.0	5.62e-20	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0020366_6	658659.HMPREF0983_03295	80.5	0.00000000000149	N/A	N/A
Pfam	UHGV-0020366_6	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0020366_6	PF05113,TIGR01665,NF041249,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_7	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_9	phrog_1535	84.9	7.3e-25	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0020366_9	445972.ANACOL_01854	131.0	7.88e-28	tape measure	N/A
COG	UHGV-0020366_9	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0020366_9	PF20155	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020366_10	1121333.JMLH01000047_gene1011	50.4	0.00000436	N/A	N/A
Pfam	UHGV-0020366_11	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0020366_11	PF16478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_12	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_13	PF08873,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020366_14	UniRef90_UPI001D096349	76.6	0.0000000000000174	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0020366_14	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_16	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_17	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_18	phrog_1328	127.9	5.3e-38	major head protein	head and packaging
UniRef90	UHGV-0020366_18	UniRef90_UPI00164DD2D5	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020366_18	1203606.HMPREF1526_00325	224.0	0	N/A	N/A
Pfam	UHGV-0020366_18	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0020366_18	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_20	phrog_64	156.9	0	portal protein	head and packaging
UniRef90	UHGV-0020366_20	UniRef90_UPI001D06C00B	320.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0020366_20	1121866.AUGK01000003_gene1429	273.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0020366_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0020366_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_21	phrog_38	206.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020366_21	UniRef90_UPI00115B4A11	112.0	1.32e-22	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0020366_21	428127.EUBDOL_01551	240.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0020366_21	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0020366_21	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_21	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_22	K17081	156.1	0	PHB2; prohibitin 2	N/A
PHROG	UHGV-0020366_22	phrog_200	168.0	0	lipoprotein	other
UniRef90	UHGV-0020366_22	UniRef90_R6BHX9	206.0	0	PHB domain-containing protein	N/A
eggNOG-mapper	UHGV-0020366_22	649747.HMPREF0083_03347	154.0	8.71608e-43	HflC protein	N/A
Pfam	UHGV-0020366_22	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0020366_22	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0020366_22	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_23	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_24	phrog_774	53.1	0.0000000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0020366_24	397290.C810_05225	80.5	1.04e-18	N/A	N/A
PHROG	UHGV-0020366_26	phrog_20735	197.6	0	N/A	unknown function
UniRef90	UHGV-0020366_26	UniRef90_R5A140	349.0	0	RNA_ligase domain-containing protein	N/A
Pfam	UHGV-0020366_26	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-0020366_26	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_28	PF01381	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020366_29	537007.BLAHAN_06602	72.4	5.25e-16	N/A	N/A
PHROG	UHGV-0020366_32	phrog_3502	49.1	0.00000000000011	N/A	unknown function
UniRef90	UHGV-0020366_32	UniRef90_A0A1H8LAR9	53.9	0.000000186	LexA DNA binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0020366_32	521460.Athe_2440	52.8	0.0000000252	domain protein	N/A
Pfam	UHGV-0020366_32	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0020366_32	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0020366_32	PF01726,MF_00732,NF006812,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_33	K14415	331.2	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0020366_33	phrog_1075	433.6	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_33	UniRef90_A0A843GTF7	536.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0020366_33	1410653.JHVC01000007_gene540	484.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0020366_33	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0020366_33	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0020366_33	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020366_37	PF05732,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_38	phrog_478	122.1	2.3e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0020366_38	UniRef90_A0A376GT60	107.0	1.95e-27	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0020366_38	588581.Cpap_1500	97.1	4.55e-24	N/A	N/A
PHROG	UHGV-0020366_42	phrog_625	74.3	1.2e-21	N/A	unknown function
UniRef90	UHGV-0020366_42	UniRef90_A0A7X4Z3N3	109.0	4e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0020366_42	397290.C810_01502	101.0	1.01e-26	N/A	N/A
structural_annotation	UHGV-0020366_42	PF12961,NF003443,COG2947	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_45	phrog_803	56.4	5.5e-16	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0020366_45	999411.HMPREF1092_03241	59.3	0.000000000388	N/A	N/A
Pfam	UHGV-0020366_45	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
KOfam	UHGV-0020366_47	K03111	82.0	1.1e-23	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020366_47	phrog_44	84.6	1.7e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_47	UniRef90_A0A7X6XCI7	142.0	9.71941e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020366_47	1541959.KQ51_01279	107.0	5.26e-29	Single-strand binding protein family	N/A
Pfam	UHGV-0020366_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020366_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020366_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020366_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020366_47	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_49	K03630	139.2	4.39994e-41	radC; DNA repair protein RadC	N/A
PHROG	UHGV-0020366_49	phrog_10276	143.4	9.20653e-43	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_49	UniRef90_UPI0018AB2C74	117.0	5.24e-31	DNA repair protein RadC	N/A
eggNOG-mapper	UHGV-0020366_49	1511.CLOST_2528	111.0	2.5e-29	Belongs to the UPF0758 family	N/A
Pfam	UHGV-0020366_49	PF04002	N/A	N/A	RadC-like JAB domain	RadC
COG	UHGV-0020366_49	COG2003	N/A	N/A	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	N/A
structural_annotation	UHGV-0020366_49	PF04002,MF_00018,NF000642,COG2003	N/A	N/A	N/A	N/A
COG	UHGV-0020366_54	COG1034	N/A	N/A	NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)	N/A
KOfam	UHGV-0020366_56	K14060	101.0	1.3e-29	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0020366_56	phrog_125	145.2	3.40516e-43	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_56	UniRef90_UPI00189A4482	160.0	1.4013e-45	recombinase family protein	N/A
eggNOG-mapper	UHGV-0020366_56	428127.EUBDOL_01535	151.0	4.47014e-43	resolvase	N/A
Pfam	UHGV-0020366_56	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0020366_56	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0020366_56	PF00239,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020366_57	592031.GCWU000322_00057	87.0	5.83e-17	N/A	N/A
KOfam	UHGV-0020366_63	K03700	64.8	1.6e-18	recU; recombination protein U	N/A
PHROG	UHGV-0020366_63	phrog_843	101.0	8.4e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_63	UniRef90_A0A7K3ZIM8	138.0	1.23e-38	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0020366_63	1391647.AVSV01000003_gene1795	127.0	3.34e-35	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0020366_63	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0020366_63	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0020366_63	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_68	K03111	113.2	3.8e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020366_68	phrog_44	110.2	2.2e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_68	UniRef90_R5MQA9	113.0	1.45e-29	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020366_68	1095770.CAHE01000089_gene1799	94.4	1.09e-22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0020366_68	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020366_68	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020366_68	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020366_68	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020366_68	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_70	phrog_6077	258.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0020366_70	1395516.PMO01_17415	157.0	1.26005e-41	N/A	N/A
structural_annotation	UHGV-0020366_70	PF02518,MF_00505,NF003555,COG0326	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_72	phrog_2139	143.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_72	UniRef90_A0A316MF38	261.0	0	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020366_72	428127.EUBDOL_01249	247.0	0	N/A	N/A
Pfam	UHGV-0020366_72	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0020366_72	PF12705,MF_03030,TIGR04328,COG2251	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_73	K00558	229.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0020366_73	phrog_116	246.8	0	DNA methyltransferase	other
UniRef90	UHGV-0020366_73	UniRef90_A0A3D0XYY2	349.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0020366_73	1121871.AUAT01000002_gene1371	286.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0020366_73	MTase_II_00058	234.7	0	Type II methyltransferase	RM
Pfam	UHGV-0020366_73	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0020366_73	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0020366_73	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0020366_73	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_74	phrog_7838	151.6	4.2039e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_74	UniRef90_A0A8D9UGW3	179.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0020366_74	742767.HMPREF9456_02052	153.0	8.12753e-44	N/A	N/A
KOfam	UHGV-0020366_78	K17680	127.9	6.4e-38	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0020366_78	phrog_239	94.2	1.4e-27	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_78	UniRef90_A0A449R130	104.0	8.15e-21	DNA helicase	N/A
eggNOG-mapper	UHGV-0020366_78	1232453.BAIF02000057_gene1145	77.4	0.00000000000277	DNA replication initiation	N/A
Pfam	UHGV-0020366_78	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0020366_78	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0020366_78	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0020366_79	phrog_428	78.5	1e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020366_79	UniRef90_A0A1S8LFI9	148.0	6.03e-40	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0020366_79	457396.CSBG_01034	112.0	1.68e-26	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0020366_79	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
COG	UHGV-0020366_79	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0020366_79	PF09524,PF02002,TIGR02220,TIGR02719,COG5625	N/A	N/A	N/A	N/A
Pfam	UHGV-0020366_81	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020366_81	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0020366_81	PF01381,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0020366_82	K07729	67.2	3.1e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0020366_82	phrog_8	81.7	1.1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020366_82	UniRef90_R2PI24	79.0	1.92e-16	Cro/CI family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020366_82	697303.Thewi_2448	76.3	6.36e-16	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0020366_82	retron_type_VI_hth_cluster2_1	45.8	0.00000000000036	N/A	Retron
Pfam	UHGV-0020366_82	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020366_82	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A