UHGV-0020405 (vOTU-148753)

Viral Genome: UHGV-0020405

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0020405
vOTU ID	vOTU-148753
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_7033_length_20915_cov_6.464296
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	59.54 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9277
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	20.72
Jumbo Phage?	No

Genome Content
Length (bps)	20,915
GC Content	66.17%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	36
CDS Density	86%
Average CDS Length (bps)	498.83
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020405_1	K00611	426.8	0	OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3]	N/A
PHROG	UHGV-0020405_1	phrog_37670	319.1	0	N/A	unknown function
UniRef90	UHGV-0020405_1	UniRef90_A0A316RV71	530.0	0	Ornithine carbamoyltransferase	N/A
eggNOG-mapper	UHGV-0020405_1	1504822.CCNO01000015_gene1008	477.0	0	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	N/A
Pfam	UHGV-0020405_1	PF02729	N/A	N/A	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	OTCace_N
Pfam	UHGV-0020405_1	PF00185	N/A	N/A	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	OTCace
NCBIFam	UHGV-0020405_1	TIGR00658.1	N/A	N/A	ornithine carbamoyltransferase	N/A
COG	UHGV-0020405_1	COG0078	N/A	N/A	Ornithine carbamoyltransferase	N/A
HAMAP	UHGV-0020405_1	MF_01109	N/A	N/A	Ornithine carbamoyltransferase, catabolic [argI]	N/A
KOfam	UHGV-0020405_2	K14059	140.9	1.49995e-41	int; integrase	N/A
PHROG	UHGV-0020405_2	phrog_1	119.5	3.2e-35	integrase	integration and excision
UniRef90	UHGV-0020405_2	UniRef90_UPI000E3DECA9	712.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0020405_2	1125712.HMPREF1316_1553	181.0	0	DNA integration	N/A
Pfam	UHGV-0020405_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020405_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020405_2	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_4	phrog_2158	186.1	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0020405_4	UniRef90_UPI001956DFEA	402.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0020405_4	661087.HMPREF1008_01121	185.0	0	Abi-like protein	N/A
PADLOC	UHGV-0020405_4	AbiD	135.8	6.6e-40	AbiD	Abi
Pfam	UHGV-0020405_4	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0020405_4	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0020405_4	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0020405_5	K22300	57.8	2.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0020405_5	phrog_8	49.7	0.000000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-0020405_5	UniRef90_C7N6S8	59.7	0.00000000394	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0020405_5	471855.Shel_15940	59.7	0.000000000662	sequence-specific DNA binding	N/A
Pfam	UHGV-0020405_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020405_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0020405_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0020405_6	K07741	61.5	2.7e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-0020405_6	phrog_130	192.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0020405_6	UniRef90_U2TPG4	188.0	0	BRO family, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0020405_6	1125712.HMPREF1316_2390	188.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0020405_6	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0020405_6	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0020405_6	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0020405_6	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020405_9	UniRef90_A0A5C5BRF6	55.5	0.0000000295	DNA-binding protein	N/A
KOfam	UHGV-0020405_13	K03111	102.6	6.3e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0020405_13	phrog_44	93.6	2.8e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020405_13	UniRef90_UPI000E3CCC4C	247.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0020405_13	1203602.HMPREF1527_01126	89.0	2.36e-20	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0020405_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0020405_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0020405_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0020405_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0020405_13	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020405_14	UniRef90_UPI000E3C1052	233.0	0	N/A	N/A
structural_annotation	UHGV-0020405_14	PF14297,TIGR01714,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_16	phrog_1891	76.2	1.8e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020405_16	UniRef90_UPI000E3C5F64	543.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020405_16	663278.Ethha_2443	71.6	0.00000000000371	HNH endonuclease	N/A
Pfam	UHGV-0020405_16	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0020405_16	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_18	phrog_21525	48.8	0.000000000000077	N/A	unknown function
PHROG	UHGV-0020405_19	phrog_478	115.9	1.8e-34	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0020405_19	UniRef90_R6R5K5	130.0	1.64e-36	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0020405_19	1111121.HMPREF1247_0834	174.0	0	N/A	N/A
PHROG	UHGV-0020405_22	phrog_1689	44.6	0.0000000000033	nucleotide kinase	other
UniRef90	UHGV-0020405_22	UniRef90_UPI000E3BC5A6	164.0	0	N/A	N/A
Pfam	UHGV-0020405_22	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0020405_22	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0020405_23	K14059	173.8	0	int; integrase	N/A
PHROG	UHGV-0020405_23	phrog_1	176.0	0	integrase	integration and excision
UniRef90	UHGV-0020405_23	UniRef90_UPI000E3C8C88	689.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0020405_23	553184.ATORI0001_0862	90.5	1.23e-17	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0020405_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020405_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020405_23	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020405_24	UniRef90_A0A415JHP5	58.5	0.000000108	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020405_24	1125712.HMPREF1316_1526	162.0	0	N/A	N/A
structural_annotation	UHGV-0020405_24	PF04545,MF_00674,TIGR03879	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020405_28	1203602.HMPREF1527_01098	71.6	4.83e-16	N/A	N/A
PHROG	UHGV-0020405_30	phrog_338	80.1	3.8e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020405_30	UniRef90_A0A414JEM2	204.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0020405_30	1121866.AUGK01000014_gene2060	121.0	1.82e-34	HNH nucleases	N/A
Pfam	UHGV-0020405_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0020405_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0020405_30	PF01844	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020405_31	PF04218,COG1710	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_32	phrog_9	128.9	2.4e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0020405_32	UniRef90_A0A3G9K0Y6	457.0	0	Phage terminase	N/A
eggNOG-mapper	UHGV-0020405_32	1203602.HMPREF1527_01095	279.0	0	Terminase	N/A
COG	UHGV-0020405_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020405_32	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_33	phrog_104	227.1	0	portal protein	head and packaging
UniRef90	UHGV-0020405_33	UniRef90_A0A414JEQ3	902.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0020405_33	742742.HMPREF9452_01310	296.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0020405_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0020405_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0020405_34	phrog_193	111.9	6.8e-33	head maturation protease	head and packaging
UniRef90	UHGV-0020405_34	UniRef90_A0A3E4QYQ8	125.0	9.14e-29	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0020405_34	521003.COLINT_02341	145.0	1.32e-36	N/A	N/A
PHROG	UHGV-0020405_35	phrog_9857	61.5	1.3e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0020405_35	UniRef90_A0A261EXY4	55.8	0.00000121	Heavy metal transporter	N/A
PHROG	UHGV-0020405_36	phrog_544	106.1	3.3e-31	major head protein	head and packaging
UniRef90	UHGV-0020405_36	UniRef90_A0A810PZM2	169.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0020405_36	1125712.HMPREF1316_1517	154.0	3.12069e-42	N/A	N/A
structural_annotation	UHGV-0020405_36	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A