UHGV-0022378 (vOTU-009304)

Viral Genome: UHGV-0022378

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0022378
vOTU ID	vOTU-009304
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-I-L_B_15_2660__NODE_1236_length_42081_cov_8.112037
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9707
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	35.65
Jumbo Phage?	No

Genome Content
Length (bps)	42,081
GC Content	39.56%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	54
CDS Density	94%
Average CDS Length (bps)	728.89
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022378_1	K14059	202.8	0	int; integrase	N/A
PHROG	UHGV-0022378_1	phrog_1	203.7	0	integrase	integration and excision
UniRef90	UHGV-0022378_1	UniRef90_UPI0008345DF0	248.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0022378_1	693746.OBV_01970	156.0	3.25998e-41	Phage integrase family	N/A
Pfam	UHGV-0022378_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0022378_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022378_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022378_1	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
KOfam	UHGV-0022378_4	K18830	53.9	0.0000000000000041	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0022378_4	phrog_8	47.0	0.00000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022378_4	UniRef90_UPI001C0F4E36	107.0	3.24e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0022378_4	411461.DORFOR_01130	100.0	1.02e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022378_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0022378_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022378_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_10	phrog_253	112.3	4e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_10	UniRef90_A0A336Q212	83.6	2.95e-17	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0022378_10	1256908.HMPREF0373_00657	72.8	0.0000000000000616	Siphovirus Gp157	N/A
Pfam	UHGV-0022378_10	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0022378_10	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_11	phrog_155	157.6	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_11	UniRef90_UPI000F63C62A	192.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0022378_11	929506.CbC4_1193	181.0	0	ERF superfamily	N/A
Pfam	UHGV-0022378_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0022378_11	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0022378_12	K03111	68.5	1.6e-19	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022378_12	phrog_44	66.8	4.1e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_12	UniRef90_F4GLF7	77.0	0.00000000000000205	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022378_12	760011.Spico_0701	77.0	3.44e-16	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0022378_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022378_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022378_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022378_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_13	phrog_428	142.3	4.1002e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_13	UniRef90_A0A383TF68	100.0	2.6e-21	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0022378_13	1295642.H839_08149	106.0	3.65e-24	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0022378_13	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0022378_13	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0022378_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0022378_13	PF08222,NF033788,COG4901	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_15	phrog_190	121.7	5.7e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_15	UniRef90_UPI001C0F5697	110.0	9.64e-29	N/A	N/A
eggNOG-mapper	UHGV-0022378_15	1236514.BAKL01000051_gene3708	90.9	4.23e-22	N/A	N/A
Pfam	UHGV-0022378_15	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0022378_15	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022378_16	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_18	phrog_4433	80.8	3.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0022378_18	886882.PPSC2_p0363	105.0	1.45e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0022378_18	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0022378_22	PF05129	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_24	phrog_301	73.4	2.9e-21	secreted protein	other
UniRef90	UHGV-0022378_24	UniRef90_UPI00112B19FF	95.5	4.35e-23	N/A	N/A
eggNOG-mapper	UHGV-0022378_24	397290.C810_05192	103.0	4.89e-27	N/A	N/A
structural_annotation	UHGV-0022378_24	PF07509,MF_00720,NF038397,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_27	phrog_10714	45.3	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0022378_27	742723.HMPREF9477_00922	58.2	0.000000000569	N/A	N/A
KOfam	UHGV-0022378_28	K22300	54.7	0.0000000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0022378_28	phrog_8	61.0	3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022378_28	UniRef90_A0A374N9T4	105.0	1.72e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022378_28	935845.JADQ01000015_gene3206	79.0	6.44e-18	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0022378_28	retron_type_VI_hth_cluster2_1	40.2	0.000000000093	N/A	Retron
Pfam	UHGV-0022378_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022378_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022378_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_31	phrog_2118	119.8	2.3e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_31	UniRef90_A0A373KMT6	205.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022378_31	610130.Closa_0730	167.0	0	HNH endonuclease	N/A
Pfam	UHGV-0022378_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0022378_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0022378_31	COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0022378_32	K01520	143.8	1.3004e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0022378_32	phrog_135	135.8	2.2e-40	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022378_32	UniRef90_UPI00164A78A3	161.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0022378_32	1282887.AUJG01000016_gene1113	144.0	2.14006e-41	N/A	N/A
Pfam	UHGV-0022378_32	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0022378_32	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0022378_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0022378_32	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_33	phrog_1863	69.8	3.4e-21	N/A	unknown function
UniRef90	UHGV-0022378_33	UniRef90_UPI001F223E8B	88.6	2.39e-21	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0022378_33	1203606.HMPREF1526_02027	74.7	1.17e-16	N/A	N/A
PHROG	UHGV-0022378_34	phrog_443	64.0	4e-18	holin	lysis
UniRef90	UHGV-0022378_34	UniRef90_R6R2Q3	90.5	1.56e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0022378_34	1235797.C816_04172	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0022378_34	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0022378_34	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0022378_35	K07273	199.7	0	acm; lysozyme	N/A
PHROG	UHGV-0022378_35	phrog_291	167.6	0	endolysin	lysis
UniRef90	UHGV-0022378_35	UniRef90_A0A373KPS8	518.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022378_35	1120933.ATUY01000002_gene158	169.0	0	lysozyme activity	N/A
Pfam	UHGV-0022378_35	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0022378_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0022378_35	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0022378_35	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022378_36	UniRef90_A0A412ULX9	73.2	7.31e-16	XRE family transcriptional regulator	N/A
Pfam	UHGV-0022378_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022378_36	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0022378_36	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022378_37	1304866.K413DRAFT_4686	50.4	0.0000029	N/A	N/A
KOfam	UHGV-0022378_41	K06909	152.9	2.8026e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022378_41	phrog_979	131.7	2.5e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0022378_41	UniRef90_UPI0006875436	562.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022378_41	1410650.JHWL01000003_gene2834	562.0	0	N/A	N/A
Pfam	UHGV-0022378_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0022378_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022378_41	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_42	phrog_156	289.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0022378_42	1410650.JHWL01000003_gene2833	464.0	0	N/A	N/A
structural_annotation	UHGV-0022378_42	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0022378_43	K07584	68.6	1.1e-19	N/A	N/A
PHROG	UHGV-0022378_43	phrog_4478	58.2	5.7e-17	peptidase	other
UniRef90	UHGV-0022378_43	UniRef90_A0A841YBI3	65.5	0.0000000000137	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0022378_43	562982.HMPREF0432_00498	61.6	0.0000000000803	Cysteine protease Prp	N/A
Pfam	UHGV-0022378_43	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0022378_43	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022378_43	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_44	phrog_13908	171.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0022378_44	1410650.JHWL01000003_gene2831	103.0	1.85e-22	N/A	N/A
PHROG	UHGV-0022378_45	phrog_1357	202.9	0	major head protein	head and packaging
UniRef90	UHGV-0022378_45	UniRef90_A0A6L5YGG5	402.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0022378_45	1410650.JHWL01000003_gene2830	304.0	0	N/A	N/A
Pfam	UHGV-0022378_45	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0022378_45	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0022378_45	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022378_47	phrog_12105	112.5	2.6e-33	N/A	unknown function
PHROG	UHGV-0022378_48	phrog_511	245.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0022378_48	1410650.JHWL01000003_gene2827	361.0	0	N/A	N/A
structural_annotation	UHGV-0022378_48	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022378_49	411460.RUMTOR_00484	87.0	0.0000000000000129	Prophage endopeptidase tail	N/A
COG	UHGV-0022378_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0022378_49	PF07902	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022378_51	1410650.JHWL01000003_gene2815	90.9	5.29e-17	N/A	N/A
KOfam	UHGV-0022378_52	K20283	45.6	0.00000000000025	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0022378_52	phrog_22978	103.8	1.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-0022378_52	748224.HMPREF9436_01406	241.0	0	N/A	N/A
structural_annotation	UHGV-0022378_53	PF10651,PF01664,NF032891	N/A	N/A	N/A	N/A