UHGV-0022520 (vOTU-114027)

Viral Genome: UHGV-0022520

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0022520
vOTU ID	vOTU-114027
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_F_8_2217__NODE_667_length_64388_cov_11.810934
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	66.1 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9773
Viral Hallmark Genes (geNomad)	2
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	3.95
Jumbo Phage?	No

Genome Content
Length (bps)	64,388
GC Content	47.27%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	79
CDS Density	88%
Average CDS Length (bps)	713.35
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0022520_3	PF08863,TIGR02383,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_7	PF12857	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_10	PF06289,COG1582	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_11	K01972	198.3	0	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-0022520_11	phrog_3869	210.9	0	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022520_11	UniRef90_A0A7C4P4A2	142.0	1.62e-32	DNA ligase	N/A
eggNOG-mapper	UHGV-0022520_11	1123248.KB893386_gene1852	133.0	4.4e-30	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	N/A
Pfam	UHGV-0022520_11	PF01653	N/A	N/A	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
COG	UHGV-0022520_11	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0022520_11	PF01653,PF03120,MF_01588,NF005932,COG0272	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_12	K03496	184.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0022520_12	phrog_164	132.7	2.5e-39	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022520_12	UniRef90_A0A353E5C8	477.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022520_12	1236504.HMPREF2132_02105	202.0	0	CobQ CobB MinD ParA nucleotide binding domain	N/A
Pfam	UHGV-0022520_12	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0022520_12	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0022520_12	PF13614,MF_00533,NF041283,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_14	PF12502,MF_02248	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022520_15	UniRef90_A0A353E5D0	124.0	8.8e-28	Rep_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0022520_15	1122983.BAJY01000004_gene1777	67.0	0.00000000477	Initiator RepB protein	N/A
COG	UHGV-0022520_15	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0022520_15	PF20964,PF01051,NF038290,COG5527	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_18	PF17457	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_19	COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_21	phrog_255	115.6	2.9e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022520_21	UniRef90_A0A353E5D6	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022520_21	1236504.HMPREF2132_01690	126.0	4.05e-33	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	N/A
Pfam	UHGV-0022520_21	PF16473	N/A	N/A	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
COG	UHGV-0022520_21	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0022520_21	PF16473,MF_00157,TIGR01298,COG5018	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022520_23	UniRef90_A0A096AGU9	826.0	0	FHA domain-containing protein	N/A
eggNOG-mapper	UHGV-0022520_23	1236504.HMPREF2132_01700	826.0	0	DNA primase activity	N/A
COG	UHGV-0022520_23	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0022520_23	PF05272,PF01807,MF_00974,MF_00016,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_24	phrog_35807	53.5	0.0000000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0022520_24	357276.EL88_12625	65.1	0.00000000236	RNA polymerase activity	N/A
COG	UHGV-0022520_24	COG0085	N/A	N/A	DNA-directed RNA polymerase, beta subunit/140 kD subunit	N/A
structural_annotation	UHGV-0022520_24	PF14902	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_27	K02338	174.0	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0022520_27	phrog_947	138.3	4.80001e-41	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022520_27	UniRef90_A0A7X6VW07	156.0	2.99001e-40	Beta sliding clamp	N/A
eggNOG-mapper	UHGV-0022520_27	755732.Fluta_2407	150.0	6.77e-39	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0022520_27	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0022520_27	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
COG	UHGV-0022520_27	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0022520_27	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_29	PF08863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022520_34	1002367.HMPREF0673_02207	232.0	0	N/A	N/A
structural_annotation	UHGV-0022520_34	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_36	phrog_799	151.9	4.2039e-45	DNA methyltransferase	other
UniRef90	UHGV-0022520_36	UniRef90_A0A096B9T1	212.0	0	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0022520_36	1236504.HMPREF2132_01885	212.0	0	DNA restriction-modification system	N/A
COG	UHGV-0022520_36	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0022520_36	PF03848,MF_02100,NF000058,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_38	K00390	47.6	1.1e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0022520_38	phrog_424	114.7	5.5e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022520_38	UniRef90_A0A2L2WN54	402.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0022520_38	762982.HMPREF9442_01221	316.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0022520_38	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0022520_38	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0022520_38	PF01507,MF_00064,NF006327,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022520_41	UniRef90_UPI001C2BD57F	97.8	1.8e-22	phage holin family protein	N/A
eggNOG-mapper	UHGV-0022520_41	457424.BFAG_02443	96.3	7.41e-23	N/A	N/A
Pfam	UHGV-0022520_41	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0022520_41	TIGR01593	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_42	PF20765	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_44	K20478	71.0	2e-21	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0022520_44	phrog_25337	100.2	1.3e-29	tail length tape measure protein	tail
UniRef90	UHGV-0022520_44	UniRef90_A0A2L2WS53	628.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0022520_44	1236504.HMPREF2132_01670	463.0	0	tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0022520_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0022520_44	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0022520_44	PF10145,TIGR01760	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022520_46	UniRef90_A0A2L2WND9	257.0	0	Primase C terminal 2	N/A
eggNOG-mapper	UHGV-0022520_46	1236504.HMPREF2132_01765	222.0	0	Primase C terminal 2 (PriCT-2)	N/A
PADLOC	UHGV-0022520_46	drt-cluster64	57.5	4.2e-16	DRT	DRT
Pfam	UHGV-0022520_46	PF08800	N/A	N/A	BT4734-like, N-terminal domain	BT4734-like_N
COG	UHGV-0022520_46	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0022520_46	PF08800,NF040562	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_47	K00942	74.3	1.9e-21	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	N/A
PHROG	UHGV-0022520_47	phrog_1815	108.0	1.1e-31	guanylate kinase	other
UniRef90	UHGV-0022520_47	UniRef90_A0A354WXC5	176.0	0	Guanylate kinase	N/A
eggNOG-mapper	UHGV-0022520_47	742727.HMPREF9447_00732	113.0	1.27e-29	Guanylate kinase	N/A
Pfam	UHGV-0022520_47	PF00625	N/A	N/A	Guanylate kinase	Guanylate_kin
COG	UHGV-0022520_47	COG0194	N/A	N/A	Guanylate kinase	N/A
structural_annotation	UHGV-0022520_47	PF00625,MF_00328,TIGR03263,COG0194	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_48	K03465	85.7	5.8e-26	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0022520_48	phrog_85	66.9	1.2e-21	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022520_48	UniRef90_A0A8F0WBE8	184.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0022520_48	1236504.HMPREF2132_01775	197.0	0	thymidylate synthase (FAD) activity	N/A
Pfam	UHGV-0022520_48	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
COG	UHGV-0022520_48	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0022520_48	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_49	phrog_229	93.7	2.3e-27	MazG-like pyrophosphatase	other
UniRef90	UHGV-0022520_49	UniRef90_A0A353E7W6	229.0	0	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0022520_49	1236504.HMPREF2132_01780	152.0	0	Mazg nucleotide pyrophosphohydrolase	N/A
Pfam	UHGV-0022520_49	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0022520_49	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0022520_49	TIGR03188,COG1694	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_52	PF11550,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_53	K21511	121.6	7.5e-36	GPC; capsid assembly protease [EC:3.4.21.-]	N/A
PHROG	UHGV-0022520_53	phrog_53	119.5	2.8e-35	head maturation protease	head and packaging
UniRef90	UHGV-0022520_53	UniRef90_A0A2L2WN07	236.0	0	Signal peptide peptidase SppA, 36K type	N/A
eggNOG-mapper	UHGV-0022520_53	1236504.HMPREF2132_01855	256.0	0	serine-type peptidase activity	N/A
Pfam	UHGV-0022520_53	PF01343	N/A	N/A	Peptidase family S49	Peptidase_S49
COG	UHGV-0022520_53	COG0616	N/A	N/A	Periplasmic serine protease, ClpP class	N/A
structural_annotation	UHGV-0022520_53	PF01343,MF_00444,TIGR00706,COG0616	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_54	PF05065,PF18998,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_55	TIGR01603,COG5437	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_56	K11921	198.2	0	cynR; LysR family transcriptional regulator, cyn operon transcriptional activator	N/A
PHROG	UHGV-0022520_56	phrog_3736	157.5	0	N/A	unknown function
UniRef90	UHGV-0022520_56	UniRef90_A0A353E8E6	488.0	0	HTH lysR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022520_56	1121890.AUDO01000009_gene38	133.0	5.67e-34	Transcriptional regulator	N/A
Pfam	UHGV-0022520_56	PF00126	N/A	N/A	Bacterial regulatory helix-turn-helix protein, lysR family	HTH_1
Pfam	UHGV-0022520_56	PF03466	N/A	N/A	LysR substrate binding domain	LysR_substrate
COG	UHGV-0022520_56	COG0583	N/A	N/A	DNA-binding transcriptional regulator, LysR family	N/A
structural_annotation	UHGV-0022520_56	PF03466,PF00126,MF_01233,NF040786,COG0583	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022520_59	PF10628	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_63	phrog_874	105.1	6.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0022520_63	762968.HMPREF9441_00541	171.0	0	N/A	N/A
structural_annotation	UHGV-0022520_63	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_65	phrog_8684	71.9	7.2e-21	N/A	unknown function
UniRef90	UHGV-0022520_65	UniRef90_UPI001F45D98B	151.0	2.94273e-44	YopX family protein	N/A
eggNOG-mapper	UHGV-0022520_65	1536769.P40081_15180	64.3	0.0000000000366	YopX protein	N/A
Pfam	UHGV-0022520_65	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0022520_65	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0022520_70	K00558	143.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0022520_70	phrog_116	149.2	0	DNA methyltransferase	other
UniRef90	UHGV-0022520_70	UniRef90_A0A353E5E4	596.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0022520_70	1033733.CAEK01000007_gene1648	169.0	1.4013e-45	Cytosine-specific methyltransferase	N/A
PADLOC	UHGV-0022520_70	MTase_II_00058	153.0	0	Type II methyltransferase	RM
Pfam	UHGV-0022520_70	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0022520_70	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0022520_70	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0022520_70	PF00145,MF_02237,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022520_76	UniRef90_A0A6A7W1D1	63.2	0.000000000039	GNAT family N-acetyltransferase	N/A
PHROG	UHGV-0022520_77	phrog_1383	129.6	1.7e-38	virion structural protein	head and packaging
UniRef90	UHGV-0022520_77	UniRef90_R6U473	190.0	0	Gp142	N/A
eggNOG-mapper	UHGV-0022520_77	1327935.A0A060AD14_9CAUD	70.5	0.00000000000128	N/A	N/A
structural_annotation	UHGV-0022520_77	COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0022520_78	phrog_2087	171.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0022520_78	1410653.JHVC01000005_gene2495	79.7	0.000000000000158	N/A	N/A
eggNOG-mapper	UHGV-0022520_79	1235803.C825_03414	98.2	7.27e-19	N/A	N/A
structural_annotation	UHGV-0022520_79	PF05136,MF_04135,TIGR01540,COG5518	N/A	N/A	N/A	N/A