UHGV-0023059 (vOTU-103576)

Viral Genome: UHGV-0023059

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0023059
vOTU ID	vOTU-103576
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_4039_length_30154_cov_16.239984
Associated Biosample	SAMEA4766013
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	69.99 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	6
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9719
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Uncertain - viral or bacterial
ViralVerify Score	1.63
Jumbo Phage?	No

Genome Content
Length (bps)	30,154
GC Content	56.67%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	49
CDS Density	85%
Average CDS Length (bps)	521.57
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0023059_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0023059_1	COG3103	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_2	phrog_199	90.5	1.6e-26	holin	lysis
UniRef90	UHGV-0023059_2	UniRef90_K1UL76	133.0	4.98e-37	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0023059_2	411467.BACCAP_00280	124.0	3.29e-34	Bacteriophage holin family	N/A
Pfam	UHGV-0023059_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0023059_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0023059_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0023059_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_3	PF08281,TIGR02983	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023059_4	UniRef90_A0A1Y3RJS2	100.0	5.86e-23	Sigma70_r4_2 domain-containing protein	N/A
structural_annotation	UHGV-0023059_6	PF02255,TIGR00823	N/A	N/A	N/A	N/A
KOfam	UHGV-0023059_7	K14059	193.9	0	int; integrase	N/A
PHROG	UHGV-0023059_7	phrog_1	174.0	0	integrase	integration and excision
UniRef90	UHGV-0023059_7	UniRef90_A0A353J242	187.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0023059_7	246199.CUS_5913	145.0	1.95e-37	Phage integrase family	N/A
Pfam	UHGV-0023059_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023059_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023059_7	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0023059_10	K22300	56.0	9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023059_10	phrog_8	42.4	0.0000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023059_10	UniRef90_A0A1C6CFH8	82.8	4.19e-18	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0023059_10	397290.C810_01441	53.5	0.000000168	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023059_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023059_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023059_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023059_11	UniRef90_N2AZL4	52.4	0.00000047	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023059_11	97139.C824_00056	52.4	0.0000000789	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0023059_11	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0023059_11	PF08667,MF_00535,NF010465,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023059_16	760568.Desku_0919	116.0	1.33e-29	N/A	N/A
structural_annotation	UHGV-0023059_16	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_17	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_19	PF20800	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_22	phrog_2872	209.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023059_22	UniRef90_UPI00082B1175	224.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0023059_22	1345695.CLSA_c30180	211.0	0	AAA domain	N/A
Pfam	UHGV-0023059_22	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0023059_22	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_23	phrog_18107	115.3	5.6e-34	N/A	unknown function
UniRef90	UHGV-0023059_23	UniRef90_UPI00058F46CC	117.0	8.88e-30	N/A	N/A
eggNOG-mapper	UHGV-0023059_23	1449050.JNLE01000003_gene3912	99.4	2.17e-23	N/A	N/A
structural_annotation	UHGV-0023059_23	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_24	phrog_15768	60.2	4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023059_24	1121344.JHZO01000003_gene982	64.7	0.00000000115	N/A	N/A
Pfam	UHGV-0023059_24	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0023059_24	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_25	phrog_9804	138.9	2.79993e-41	N/A	unknown function
UniRef90	UHGV-0023059_25	UniRef90_UPI0015C5D332	158.0	1.4013e-45	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0023059_25	1121344.JHZO01000003_gene981	138.0	2.52e-38	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0023059_25	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0023059_25	PF11417	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023059_27	UniRef90_UPI00054386A4	55.8	0.000000119	nucleotide pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-0023059_27	272562.CA_C1930	58.5	0.0000000019	Mazg nucleotide pyrophosphohydrolase	N/A
Pfam	UHGV-0023059_27	PF12643	N/A	N/A	MazG-like family	MazG-like
COG	UHGV-0023059_27	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0023059_27	COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_28	phrog_757	234.6	0	DNA methyltransferase	other
UniRef90	UHGV-0023059_28	UniRef90_A0A3E2U1Y9	231.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0023059_28	1235790.C805_00032	239.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0023059_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0023059_28	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0023059_29	K00390	59.6	2.3e-26	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0023059_29	phrog_424	117.2	1.2e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0023059_29	UniRef90_A0A1Q6PWT9	389.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0023059_29	742733.HMPREF9469_00225	264.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0023059_29	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0023059_29	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0023059_29	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023059_33	UniRef90_A0A832L5E4	80.5	6.98e-16	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0023059_33	1304885.AUEY01000070_gene1852	84.0	6.01e-18	N/A	N/A
structural_annotation	UHGV-0023059_33	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_34	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_37	phrog_15863	148.1	3.36312e-44	N/A	unknown function
UniRef90	UHGV-0023059_37	UniRef90_A0A1U7M9V5	136.0	6.47e-38	Chaperone protein DnaJ	N/A
eggNOG-mapper	UHGV-0023059_37	471855.Shel_20200	132.0	6.87e-37	Heat shock protein DnaJ domain protein	N/A
COG	UHGV-0023059_37	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0023059_38	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
Pfam	UHGV-0023059_39	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
structural_annotation	UHGV-0023059_39	PF02796,TIGR02844	N/A	N/A	N/A	N/A
KOfam	UHGV-0023059_40	K06909	126.0	3.6e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023059_40	phrog_979	159.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023059_40	UniRef90_UPI0004130EC4	477.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023059_40	1121091.AUMP01000003_gene2581	477.0	0	Terminase-like family	N/A
Pfam	UHGV-0023059_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0023059_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023059_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_41	phrog_156	209.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0023059_41	935837.JAEK01000054_gene1466	80.1	0.000000000000789	N/A	N/A
structural_annotation	UHGV-0023059_41	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_43	phrog_1357	235.1	0	major head protein	head and packaging
UniRef90	UHGV-0023059_43	UniRef90_A0A316LK11	240.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0023059_43	935837.JAEK01000054_gene1469	233.0	0	N/A	N/A
Pfam	UHGV-0023059_43	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0023059_43	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0023059_43	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_45	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0023059_46	phrog_511	63.5	2.1e-18	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0023059_46	1449126.JQKL01000046_gene2081	58.9	0.00000333	N/A	N/A
COG	UHGV-0023059_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0023059_46	PF11134,MF_03022,NF010237,TIGR04362,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023059_48	PF08703,TIGR04319,COG3524	N/A	N/A	N/A	N/A