UHGV-0024059 (vOTU-001584)

Viral Genome: UHGV-0024059

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0024059
vOTU ID	vOTU-001584
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-I-L_D_12_1182__NODE_1421_length_61816_cov_875.406583
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	6
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9737
Viral Hallmark Genes (geNomad)	2
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	8.13
Jumbo Phage?	No

Genome Content
Length (bps)	61,739
GC Content	42.83%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	66
CDS Density	94%
Average CDS Length (bps)	875.05
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0024059_1	K00558	112.2	4.7e-33	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0024059_1	phrog_10089	156.0	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0024059_1	UniRef90_UPI001C45BE0D	8020.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0024059_1	1227276.HMPREF9148_00165	199.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0024059_1	MTase_II_00164	92.2	1.4e-26	Type II methyltransferase	RM
Pfam	UHGV-0024059_1	PF18823	N/A	N/A	Inorganic Pyrophosphatase	InPase
Pfam	UHGV-0024059_1	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
Pfam	UHGV-0024059_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0024059_1	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0024059_2	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_3	phrog_156	140.0	1.10002e-41	portal protein	head and packaging
eggNOG-mapper	UHGV-0024059_3	742817.HMPREF9449_01798	204.0	0	N/A	N/A
structural_annotation	UHGV-0024059_3	PF16510,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_5	phrog_2	84.4	1.7e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0024059_5	UniRef90_A0A413BQF7	1320.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0024059_5	1121098.HMPREF1534_01124	489.0	0	Mu-like prophage FluMu protein gp28	N/A
COG	UHGV-0024059_5	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0024059_5	PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_6	PF01694,MF_01594,NF008155,COG0705	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_8	phrog_22323	65.2	4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0024059_8	1347393.HG726020_gene1830	56.6	0.00000144	N/A	N/A
PHROG	UHGV-0024059_9	phrog_26635	166.6	0	N/A	unknown function
UniRef90	UHGV-0024059_9	UniRef90_UPI001C38231A	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024059_9	1227276.HMPREF9148_00159	212.0	0	N/A	N/A
structural_annotation	UHGV-0024059_9	PF17236,MF_04133,TIGR01554,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_11	PF17212	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024059_12	UniRef90_UPI001C39588E	63.2	0.00000127	pectinesterase family protein	N/A
eggNOG-mapper	UHGV-0024059_12	1410630.JNKP01000001_gene1971	72.8	0.0000000000829	N/A	N/A
PHROG	UHGV-0024059_13	phrog_419	108.0	8.9e-32	N/A	unknown function
UniRef90	UHGV-0024059_13	UniRef90_UPI001CC11C4F	91.3	6.67e-22	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0024059_13	457405.FSDG_01548	98.2	2.44e-25	N/A	N/A
structural_annotation	UHGV-0024059_13	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0024059_15	K01447	50.4	0.000000000000043	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0024059_15	phrog_822	126.5	1.5e-37	amidase	lysis
UniRef90	UHGV-0024059_15	UniRef90_A0A374BXC5	278.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0024059_15	888832.HMPREF9420_0424	158.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0024059_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0024059_15	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0024059_15	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024059_18	UniRef90_A0A413BQD9	228.0	0	DNA-binding protein	N/A
structural_annotation	UHGV-0024059_18	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_19	phrog_16490	56.9	5e-16	N/A	unknown function
UniRef90	UHGV-0024059_19	UniRef90_A0A8F1B6S5	245.0	0	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0024059_19	762982.HMPREF9442_01201	102.0	1.54e-22	N/A	N/A
structural_annotation	UHGV-0024059_20	PF10628	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_21	PF21744	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_23	phrog_15037	40.8	0.000000000028	N/A	unknown function
UniRef90	UHGV-0024059_23	UniRef90_UPI001C46F9DA	311.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0024059_23	563008.HMPREF0665_02457	77.4	9.59e-16	N/A	N/A
structural_annotation	UHGV-0024059_23	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_27	phrog_32516	281.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0024059_27	1121098.HMPREF1534_01101	330.0	0	N/A	N/A
structural_annotation	UHGV-0024059_27	PF11134,COG3292	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_31	phrog_19572	177.4	0	N/A	unknown function
UniRef90	UHGV-0024059_31	UniRef90_UPI001C4689B9	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024059_31	537011.PREVCOP_04244	218.0	0	N/A	N/A
Pfam	UHGV-0024059_31	PF14902	N/A	N/A	N/A	DUF4494
structural_annotation	UHGV-0024059_31	PF14902	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_32	PF13069	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_35	phrog_32732	80.1	2.1e-23	N/A	unknown function
UniRef90	UHGV-0024059_35	UniRef90_UPI0018EE5327	122.0	7.27e-32	N/A	N/A
eggNOG-mapper	UHGV-0024059_35	411477.PARMER_02034	82.8	2.45e-18	N/A	N/A
dbAPIS	UHGV-0024059_35	APIS052	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_38	PF03127	N/A	N/A	N/A	N/A
KOfam	UHGV-0024059_40	K24451	365.8	0	zim; modification methylase	N/A
PHROG	UHGV-0024059_40	phrog_67	118.8	4.7e-35	DNA methyltransferase	other
UniRef90	UHGV-0024059_40	UniRef90_UPI001F3BA0C8	396.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0024059_40	457424.BFAG_04701	394.0	0	DNA methylase	N/A
PADLOC	UHGV-0024059_40	MTase_II_00069	446.3	0	Type II methyltransferase	RM
Pfam	UHGV-0024059_40	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0024059_40	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0024059_40	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_44	phrog_824	94.3	8.1e-28	N/A	unknown function
UniRef90	UHGV-0024059_44	UniRef90_A0A7W7F241	85.5	3.48e-18	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0024059_44	1122985.HMPREF1991_01533	81.3	2.4e-17	VRR-NUC domain	N/A
PHROG	UHGV-0024059_45	phrog_345	47.5	0.00000000000037	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024059_45	435591.BDI_0859	60.5	0.000000328	DnaD domain protein	N/A
COG	UHGV-0024059_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0024059_45	PF07106,MF_01819,TIGR01714,COG1510	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_46	phrog_1008	43.8	8.2e-21	DNA methyltransferase	other
eggNOG-mapper	UHGV-0024059_46	1392486.JIAF01000004_gene2038	120.0	8.25e-30	N/A	N/A
KOfam	UHGV-0024059_47	K00558	77.7	1.3e-22	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0024059_47	phrog_363	100.7	1.5e-29	DNA methyltransferase	other
UniRef90	UHGV-0024059_47	UniRef90_UPI0014902964	143.0	2.14959e-42	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0024059_47	1227276.HMPREF9148_00139	169.0	0	DNA methylase	N/A
PADLOC	UHGV-0024059_47	MTase_II_00058	92.8	7.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0024059_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0024059_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0024059_49	K08073	87.5	1.3e-25	PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]	N/A
UniRef90	UHGV-0024059_49	UniRef90_UPI001C46BFDE	197.0	0	HAD-IIIA family hydrolase	N/A
eggNOG-mapper	UHGV-0024059_49	4920.XP_004194808.1	77.8	0.00000000000000529	Polynucleotide kinase 3 phosphatase	N/A
Pfam	UHGV-0024059_49	PF08645	N/A	N/A	Polynucleotide kinase 3 phosphatase	PNK3P
NCBIFam	UHGV-0024059_49	TIGR01662.1	N/A	N/A	HAD-IIIA family hydrolase	N/A
COG	UHGV-0024059_49	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0024059_49	PF08645,MF_01022,TIGR01664,COG0241	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024059_50	PF19070	N/A	N/A	N/A	N/A
PHROG	UHGV-0024059_52	phrog_6234	41.8	0.000000000017	host RecBCD nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0024059_54	999419.HMPREF1077_02928	65.1	0.00000000000226	N/A	N/A
structural_annotation	UHGV-0024059_54	NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024059_55	999419.HMPREF1077_02927	66.2	0.0000000000000738	N/A	N/A
PHROG	UHGV-0024059_56	phrog_874	75.9	7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0024059_56	1121098.HMPREF1534_01095	140.0	7.2e-39	N/A	N/A
structural_annotation	UHGV-0024059_56	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024059_58	UniRef90_A0A3C0D906	336.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0024059_58	709991.Odosp_3613	81.3	5.11e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0024059_58	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0024059_58	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024059_60	1270196.JCKI01000001_gene3597	54.7	0.0000000118	N/A	N/A
KOfam	UHGV-0024059_61	K04763	65.7	8.2e-19	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0024059_61	phrog_1	88.9	6.9e-26	integrase	integration and excision
UniRef90	UHGV-0024059_61	UniRef90_A0A3R5YAT6	935.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0024059_61	679191.HMPREF9018_0670	415.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024059_61	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-0024059_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024059_61	PF13102,PF17293,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024059_62	1336803.PHEL49_0023	48.9	0.00000588	N/A	N/A