UHGV-0025520 (vOTU-072264)

Viral Genome: UHGV-0025520

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0025520
vOTU ID	vOTU-072264
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_F_18_2239__NODE_2223_length_42173_cov_5.270026
Associated Biosample	SAMEA4766199
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	98.74 (High-quality)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9817
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	22.49
Jumbo Phage?	No

Genome Content
Length (bps)	42,173
GC Content	55.17%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	94%
Average CDS Length (bps)	657.20
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025520_1	phrog_1863	65.6	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0025520_1	748224.HMPREF9436_01412	97.4	7.18e-26	N/A	N/A
PHROG	UHGV-0025520_2	phrog_1129	75.2	5.1e-22	holin	lysis
UniRef90	UHGV-0025520_2	UniRef90_A0A8D9PDD4	180.0	0	Holin	N/A
eggNOG-mapper	UHGV-0025520_2	1226322.HMPREF1545_00069	111.0	9.8e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0025520_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0025520_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_3	phrog_435	57.6	2.5e-16	endolysin	lysis
UniRef90	UHGV-0025520_3	UniRef90_A0A8D9PDS4	413.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0025520_3	1226322.HMPREF1545_01953	85.1	5.42e-17	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0025520_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0025520_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_4	phrog_12105	85.5	3.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0025520_4	1519439.JPJG01000060_gene1891	62.4	0.0000000000704	N/A	N/A
PHROG	UHGV-0025520_5	phrog_511	219.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0025520_5	UniRef90_A0A8D9UH72	861.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0025520_5	1226322.HMPREF1545_00785	324.0	0	N/A	N/A
structural_annotation	UHGV-0025520_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_6	UniRef90_A0A8D9UGT1	134.0	1.87e-38	Sigma C capsid protein	N/A
eggNOG-mapper	UHGV-0025520_7	1410650.JHWL01000003_gene2815	55.8	0.00000875	N/A	N/A
UniRef90	UHGV-0025520_8	UniRef90_A0A1C6CVE5	983.0	0	ADP-ribosyltransferase exoenzyme	N/A
eggNOG-mapper	UHGV-0025520_8	693746.OBV_01590	479.0	0	N/A	N/A
PHROG	UHGV-0025520_9	phrog_3754	94.2	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0025520_9	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-0025520_10	phrog_21718	103.0	2.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0025520_10	397290.C810_05210	72.8	0.0000000000000425	N/A	N/A
PHROG	UHGV-0025520_11	phrog_22984	76.2	3.6e-22	N/A	unknown function
PHROG	UHGV-0025520_12	phrog_16490	124.9	8.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0025520_12	1408437.JNJN01000043_gene803	170.0	0	N/A	N/A
PHROG	UHGV-0025520_13	phrog_20016	181.5	0	N/A	unknown function
UniRef90	UHGV-0025520_13	UniRef90_A0A285PT46	183.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0025520_13	1226322.HMPREF1545_00077	163.0	0	N/A	N/A
structural_annotation	UHGV-0025520_13	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025520_14	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_15	K14059	172.8	0	int; integrase	N/A
PHROG	UHGV-0025520_15	phrog_1	166.6	0	integrase	integration and excision
UniRef90	UHGV-0025520_15	UniRef90_A0A174HFN7	350.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0025520_15	742738.HMPREF9460_01344	214.0	0	Phage integrase family	N/A
Pfam	UHGV-0025520_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025520_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0025520_15	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_16	UniRef90_A0A810PZB1	117.0	1.31e-29	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0025520_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0025520_16	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025520_17	477974.Daud_0706	66.6	0.000000000112	PFAM copper amine oxidase domain protein	N/A
COG	UHGV-0025520_17	COG0103	N/A	N/A	Ribosomal protein S9	N/A
PHROG	UHGV-0025520_19	phrog_8	43.6	0.0000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025520_19	UniRef90_A0A8D9UHB1	168.0	0	Repressor protein CI	N/A
eggNOG-mapper	UHGV-0025520_19	1507.HMPREF0262_00424	56.2	0.0000000107	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0025520_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025520_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025520_19	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025520_20	PF13601,MF_01819,TIGR02337,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_21	UniRef90_A0A8D9PDN2	126.0	5.45e-37	DNA-binding protein	N/A
structural_annotation	UHGV-0025520_21	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_24	phrog_22529	50.3	0.000000000000031	N/A	unknown function
UniRef90	UHGV-0025520_24	UniRef90_A0A8D9UHA1	265.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0025520_24	742733.HMPREF9469_00853	66.2	0.0000000000306	3D domain	N/A
Pfam	UHGV-0025520_24	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0025520_24	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0025520_24	COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_26	K06236	61.9	4.8e-18	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0025520_26	phrog_4433	284.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0025520_26	106648.BBLJ01000054_gene3814	103.0	1.33e-24	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0025520_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0025520_26	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0025520_27	UniRef90_A0A8D9UH91	300.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0025520_27	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0025520_27	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_29	UniRef90_A0A845QLQ8	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025520_29	33035.JPJF01000135_gene5082	114.0	5.68e-29	N/A	N/A
Pfam	UHGV-0025520_29	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0025520_29	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_30	UniRef90_B0PAM4	154.0	2.66247e-44	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0025520_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_31	phrog_72	49.8	0.000000000000057	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025520_31	UniRef90_A0A8D9PDS2	199.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0025520_31	1507.HMPREF0262_00432	117.0	6.78e-31	N/A	N/A
structural_annotation	UHGV-0025520_31	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_32	phrog_374	180.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025520_32	UniRef90_A0A7W0C2S3	195.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025520_32	756499.Desde_1078	176.0	0	N/A	N/A
structural_annotation	UHGV-0025520_32	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_34	phrog_7566	93.0	1.9e-27	N/A	unknown function
UniRef90	UHGV-0025520_34	UniRef90_A0A8D9UHC0	144.0	3.57331e-43	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0025520_34	1007096.BAGW01000031_gene114	137.0	6.28006e-41	N/A	N/A
KOfam	UHGV-0025520_35	K03111	122.6	5e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025520_35	phrog_44	123.3	2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025520_35	UniRef90_A0A8D9PDS7	246.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0025520_35	552398.HMPREF0866_01635	119.0	1.26e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0025520_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025520_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025520_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025520_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025520_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_37	phrog_15768	75.2	5.7e-23	N/A	unknown function
UniRef90	UHGV-0025520_37	UniRef90_UPI001959E913	107.0	2.95e-25	N/A	N/A
eggNOG-mapper	UHGV-0025520_37	445970.ALIPUT_02689	81.6	5.78e-16	DNA-binding transcription factor activity	N/A
Pfam	UHGV-0025520_37	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0025520_37	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0025520_37	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_38	K02315	124.0	1.6e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0025520_38	phrog_50	129.5	2.9e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025520_38	UniRef90_A0A810Q3X8	296.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025520_38	445972.ANACOL_01829	184.0	0	N/A	N/A
Pfam	UHGV-0025520_38	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0025520_38	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0025520_38	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_40	phrog_190	109.5	2.8e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025520_40	UniRef90_A0A8D9PDD6	271.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0025520_40	862517.HMPREF9225_1657	82.0	2.87e-18	N/A	N/A
Pfam	UHGV-0025520_40	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0025520_40	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_41	K00390	57.2	4.5e-17	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0025520_41	phrog_424	122.5	3.3e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025520_41	UniRef90_A0A1H7KWC5	313.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-0025520_41	665956.HMPREF1032_00140	278.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0025520_41	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0025520_41	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0025520_41	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_44	UniRef90_A0A8D9PDK1	79.3	8.75e-17	Anti-repressor	N/A
PHROG	UHGV-0025520_46	phrog_599	44.3	0.0000000000034	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025520_46	UniRef90_A0A3R6D179	101.0	4.63e-26	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0025520_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0025520_46	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0025520_46	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0025520_46	TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025520_50	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_51	K22299	48.1	0.00000000000028	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0025520_51	phrog_8	67.1	3.7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025520_51	UniRef90_A0A8D9PDC4	154.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0025520_51	1226322.HMPREF1545_00039	79.3	1.19e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0025520_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025520_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025520_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_52	UniRef90_A0A8D9PDT2	205.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0025520_52	1226322.HMPREF1545_00042	140.0	2.94006e-41	N/A	N/A
structural_annotation	UHGV-0025520_52	PF04218,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0025520_53	K06909	117.2	1.7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025520_53	phrog_979	196.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0025520_53	UniRef90_A0A8D9PDR5	976.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0025520_53	657322.FPR_02290	618.0	0	Terminase-like family	N/A
Pfam	UHGV-0025520_53	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025520_53	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025520_53	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_54	phrog_156	336.6	0	portal protein	head and packaging
UniRef90	UHGV-0025520_54	UniRef90_A0A8D9UH10	1137.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0025520_54	748224.HMPREF9436_01396	531.0	0	N/A	N/A
structural_annotation	UHGV-0025520_54	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025520_55	UniRef90_A0A8D9PDR6	182.0	0	YsxB-like protein	N/A
Pfam	UHGV-0025520_55	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0025520_55	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_56	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-0025520_56	UniRef90_A0A174CZ20	113.0	7.05e-25	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0025520_56	1410650.JHWL01000003_gene2831	119.0	1.36e-28	N/A	N/A
PHROG	UHGV-0025520_57	phrog_1357	276.2	0	major head protein	head and packaging
UniRef90	UHGV-0025520_57	UniRef90_A0A8D9UH64	622.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0025520_57	1449126.JQKL01000003_gene1695	400.0	0	N/A	N/A
Pfam	UHGV-0025520_57	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0025520_57	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0025520_57	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025520_58	phrog_15239	85.6	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0025520_58	1449126.JQKL01000003_gene1694	50.8	0.00000496	N/A	N/A
PHROG	UHGV-0025520_59	phrog_1419	60.5	1.2e-17	tail protein	tail
eggNOG-mapper	UHGV-0025520_59	1151292.QEW_0668	61.6	0.000000537	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0025520_59	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0025520_60	K17256	44.2	0.00000000000013	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0025520_60	phrog_35892	101.6	1.4013e-45	N/A	unknown function
Pfam	UHGV-0025520_60	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0025520_60	PF13855	N/A	N/A	Leucine rich repeat	LRR_8