UHGV-0026776 (vOTU-043760)

Viral Genome: UHGV-0026776

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0026776
vOTU ID	vOTU-043760
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_3023_length_37597_cov_16.007303
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9809
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	29.63
Jumbo Phage?	No

Genome Content
Length (bps)	37,549
GC Content	59.78%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	49
CDS Density	93%
Average CDS Length (bps)	712.65
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0026776_2	K14059	215.9	0	int; integrase	N/A
PHROG	UHGV-0026776_2	phrog_1	210.5	0	integrase	integration and excision
UniRef90	UHGV-0026776_2	UniRef90_R7GTS6	441.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0026776_2	536233.CLO_0855	329.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0026776_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0026776_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0026776_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0026776_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026776_3	UniRef90_A0A8D9UHA6	71.2	0.00000000000761	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0026776_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026776_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026776_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0026776_4	K22300	81.8	9.8e-24	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0026776_4	phrog_8	65.4	1.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026776_4	UniRef90_UPI0011C7B845	102.0	5.47e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_4	1444310.JANV01000024_gene1355	77.0	9.33e-16	Peptidase S24-like	N/A
PADLOC	UHGV-0026776_4	retron_type_VI_hth_cluster2_1	47.9	0.00000000000032	N/A	Retron
Pfam	UHGV-0026776_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026776_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0026776_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0026776_5	K15773	41.6	0.000000000021	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0026776_5	UniRef90_UPI0019586B68	81.3	7.74e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_5	411465.PEPMIC_00039	48.1	0.00000227	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0026776_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026776_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0026776_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0026776_6	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0026776_6	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-0026776_7	phrog_1305	144.2	5.395e-43	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026776_7	UniRef90_UPI001C3A6F66	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0026776_7	588581.Cpap_0887	172.0	0	N/A	N/A
Pfam	UHGV-0026776_7	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0026776_7	COG2250	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026776_8	UniRef90_A0A0D8I7B2	70.1	0.0000000000000357	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_8	1280692.AUJL01000009_gene2975	66.2	0.000000000000158	Helix-turn-helix domain	N/A
Pfam	UHGV-0026776_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0026776_8	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0026776_9	PF15591,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_11	phrog_22529	43.1	0.000000000004	N/A	unknown function
UniRef90	UHGV-0026776_11	UniRef90_A0A8D9UHA1	167.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0026776_11	742733.HMPREF9469_00853	66.6	0.0000000000287	3D domain	N/A
COG	UHGV-0026776_11	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0026776_11	COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_14	phrog_38338	61.3	1.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0026776_14	693746.OBV_24020	87.4	1.25e-20	N/A	N/A
PHROG	UHGV-0026776_15	phrog_8470	232.5	0	N/A	unknown function
UniRef90	UHGV-0026776_15	UniRef90_UPI00195E492B	415.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_15	1378168.N510_01842	409.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0026776_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0026776_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_16	phrog_15609	176.7	0	N/A	unknown function
UniRef90	UHGV-0026776_16	UniRef90_UPI001C102D5E	166.0	9.80909e-45	N/A	N/A
eggNOG-mapper	UHGV-0026776_16	693746.OBV_25390	158.0	3.30987e-42	N/A	N/A
Pfam	UHGV-0026776_16	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0026776_16	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0026776_16	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_18	phrog_2	92.8	4.9e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0026776_18	UniRef90_R6TQ60	645.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0026776_18	693746.OBV_23980	609.0	0	phage Terminase large subunit	N/A
COG	UHGV-0026776_18	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0026776_18	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
Pfam	UHGV-0026776_20	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0026776_20	PF04448,NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026776_24	NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_26	phrog_3584	130.0	1.3e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0026776_26	1226322.HMPREF1545_03841	108.0	2.72e-25	N/A	N/A
structural_annotation	UHGV-0026776_26	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0026776_28	K07474	82.9	7.5e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0026776_28	phrog_51	84.1	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0026776_28	UniRef90_G4KPV4	99.8	1.49e-23	Terminase small subunit family protein	N/A
eggNOG-mapper	UHGV-0026776_28	693746.OBV_23940	99.8	2.5e-24	DNA packaging	N/A
Pfam	UHGV-0026776_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0026776_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0026776_28	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_29	phrog_156	243.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0026776_29	693746.OBV_23930	589.0	0	N/A	N/A
structural_annotation	UHGV-0026776_29	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026776_30	PF04606	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_32	phrog_35275	88.2	8.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0026776_32	693746.OBV_23910	142.0	4.54e-37	N/A	N/A
PHROG	UHGV-0026776_33	phrog_24113	82.7	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0026776_33	1226322.HMPREF1545_03847	92.8	2.43e-22	N/A	N/A
structural_annotation	UHGV-0026776_33	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_34	phrog_371	115.5	4.5e-34	major head protein	head and packaging
UniRef90	UHGV-0026776_34	UniRef90_R6TFU9	454.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_34	693746.OBV_23890	387.0	0	N/A	N/A
Pfam	UHGV-0026776_34	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0026776_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_35	phrog_13046	47.4	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0026776_35	693746.OBV_23880	171.0	0	N/A	N/A
structural_annotation	UHGV-0026776_35	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0026776_36	phrog_3287	123.6	8.5e-37	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0026776_36	693746.OBV_23870	757.0	0	N/A	N/A
structural_annotation	UHGV-0026776_36	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0026776_37	K16628	91.9	2e-27	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0026776_37	phrog_819	142.0	3.09967e-42	tail protein	tail
eggNOG-mapper	UHGV-0026776_37	1203606.HMPREF1526_02029	82.8	0.000000000000101	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0026776_37	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0026776_37	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
PHROG	UHGV-0026776_38	phrog_24451	51.2	0.000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0026776_38	1408437.JNJN01000040_gene189	134.0	5.98e-39	N/A	N/A
PHROG	UHGV-0026776_42	phrog_7805	149.9	1.4013e-44	N/A	unknown function
UniRef90	UHGV-0026776_42	UniRef90_UPI0009E7940D	144.0	6.02e-39	SEC-C domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_42	1391646.AVSU01000117_gene830	124.0	8.67e-32	N/A	N/A
PHROG	UHGV-0026776_43	phrog_199	79.2	4.1e-23	holin	lysis
UniRef90	UHGV-0026776_43	UniRef90_R6DA24	174.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0026776_43	1160721.RBI_I01565	121.0	4.06e-33	Bacteriophage holin family	N/A
Pfam	UHGV-0026776_43	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0026776_43	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0026776_43	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0026776_43	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0026776_44	K01447	89.8	3.9e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0026776_44	phrog_1493	166.0	0	endolysin	lysis
UniRef90	UHGV-0026776_44	UniRef90_A0A350TLR9	301.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0026776_44	553973.CLOHYLEM_04450	223.0	0	Ami_2	N/A
Pfam	UHGV-0026776_44	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0026776_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0026776_44	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0026776_44	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026776_45	693746.OBV_01600	60.5	0.000000472	N/A	N/A
PHROG	UHGV-0026776_46	phrog_13543	88.8	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0026776_46	445971.ANASTE_00728	318.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-0026776_46	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0026776_46	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0026776_46	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0026776_47	phrog_33872	57.7	1.5e-20	N/A	unknown function
structural_annotation	UHGV-0026776_48	PF02805	N/A	N/A	N/A	N/A