UHGV-0029936 (vOTU-078081)

Viral Genome: UHGV-0029936

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0029936
vOTU ID	vOTU-078081
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112__NODE_4942_length_34146_cov_5.084769
Associated Biosample	SAMEA4765572
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	15
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9784
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	33.05
Jumbo Phage?	No

Genome Content
Length (bps)	34,146
GC Content	54.90%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	94%
Average CDS Length (bps)	542.29
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029936_1	phrog_20388	95.3	6.3e-28	endolysin	lysis
UniRef90	UHGV-0029936_1	UniRef90_UPI00189D4A1D	100.0	4.48e-22	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0029936_1	1203606.HMPREF1526_00253	104.0	8.67e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0029936_1	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0029936_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0029936_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0029936_1	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_2	phrog_30034	120.2	2.1e-35	N/A	unknown function
UniRef90	UHGV-0029936_2	UniRef90_A0A2Y9CAD1	156.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0029936_2	411460.RUMTOR_02099	133.0	8.08e-37	N/A	N/A
Pfam	UHGV-0029936_2	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0029936_2	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029936_4	PF07210,PF01404,TIGR03000,NF038128,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_5	phrog_16573	43.8	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0029936_5	1160721.RBI_I01572	74.7	0.00000000000155	N/A	N/A
structural_annotation	UHGV-0029936_5	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_8	phrog_1067	319.4	0	minor head protein	head and packaging
UniRef90	UHGV-0029936_8	UniRef90_A0A1C6H6B4	479.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0029936_8	1123263.AUKY01000068_gene489	342.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0029936_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0029936_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0029936_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029936_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_9	phrog_33	80.8	2.8e-23	distal tail protein Dit	tail
UniRef90	UHGV-0029936_9	UniRef90_A0A173Z1X4	181.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0029936_9	536233.CLO_0897	78.6	0.00000000000000838	tail component	N/A
Pfam	UHGV-0029936_9	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0029936_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0029936_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_10	phrog_1272	98.7	6e-36	tail length tape measure protein	tail
UniRef90	UHGV-0029936_10	UniRef90_A0A1Y4R6K5	199.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0029936_10	1449343.JQLQ01000002_gene1324	183.0	1.4013e-45	Phage tail tape measure protein	N/A
COG	UHGV-0029936_10	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029936_10	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_13	phrog_88	80.3	2.2e-23	major tail protein	tail
UniRef90	UHGV-0029936_13	UniRef90_UPI0018771F27	135.0	1.34e-36	phage tail protein	N/A
eggNOG-mapper	UHGV-0029936_13	33035.JPJF01000039_gene278	80.9	4.26e-16	N/A	N/A
structural_annotation	UHGV-0029936_13	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_14	phrog_5	41.1	0.000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0029936_14	UniRef90_A0A1C6FG30	137.0	2.35e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0029936_14	908340.HMPREF9406_2573	130.0	3.48e-36	N/A	N/A
structural_annotation	UHGV-0029936_14	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029936_15	1232446.BAIE02000002_gene829	94.4	1.14e-23	N/A	N/A
structural_annotation	UHGV-0029936_15	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_16	phrog_19734	91.9	6.2e-27	N/A	unknown function
UniRef90	UHGV-0029936_16	UniRef90_A0A3E3E563	84.0	1.26e-18	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0029936_16	1235798.C817_04587	95.1	8.88e-24	N/A	N/A
structural_annotation	UHGV-0029936_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_17	phrog_2550	71.7	5.7e-21	N/A	unknown function
UniRef90	UHGV-0029936_17	UniRef90_UPI0008717716	93.2	7.24e-23	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0029936_17	1226322.HMPREF1545_00117	82.0	3.18e-19	N/A	N/A
structural_annotation	UHGV-0029936_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_18	phrog_10	200.3	0	major head protein	head and packaging
UniRef90	UHGV-0029936_18	UniRef90_A0A1C6H720	644.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0029936_18	1226322.HMPREF1545_00116	593.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0029936_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0029936_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0029936_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0029936_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0029936_19	K06904	152.4	4.2039e-45	N/A	N/A
PHROG	UHGV-0029936_19	phrog_80	175.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0029936_19	UniRef90_U2SBX0	234.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0029936_19	1226322.HMPREF1545_00115	234.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0029936_19	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0029936_19	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0029936_19	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0029936_19	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_20	phrog_12	175.3	0	portal protein	head and packaging
UniRef90	UHGV-0029936_20	UniRef90_A0A0D8IVL0	532.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0029936_20	1226322.HMPREF1545_00114	453.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0029936_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0029936_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0029936_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0029936_20	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_21	phrog_9	286.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0029936_21	UniRef90_A0A2V2GQ67	961.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0029936_21	1226322.HMPREF1545_00113	854.0	0	Phage Terminase	N/A
Pfam	UHGV-0029936_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0029936_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0029936_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0029936_21	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_22	phrog_361	70.3	2.9e-20	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0029936_22	596315.HMPREF0634_0388	62.8	0.0000000000541	Phage terminase, small subunit	N/A
Pfam	UHGV-0029936_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0029936_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_23	phrog_119	60.6	2.5e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029936_23	UniRef90_A0A0D8IV26	84.3	5.52e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0029936_23	1415774.U728_1257	65.5	0.000000000000494	HNH nucleases	N/A
Pfam	UHGV-0029936_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0029936_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0029936_24	742738.HMPREF9460_02503	89.4	2.32e-21	N/A	N/A
structural_annotation	UHGV-0029936_24	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_26	phrog_3584	164.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0029936_26	1226322.HMPREF1545_03841	249.0	0	N/A	N/A
structural_annotation	UHGV-0029936_26	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_28	phrog_2118	96.7	2.9e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029936_28	UniRef90_A0A417HX51	194.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0029936_28	1511.CLOST_1546	121.0	3.61e-34	HNH endonuclease	N/A
Pfam	UHGV-0029936_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0029936_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0029936_28	TIGR02646,COG1403	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029936_30	1121866.AUGK01000006_gene869	85.1	2.84e-19	N/A	N/A
PHROG	UHGV-0029936_31	phrog_799	51.2	0.000000000000015	DNA methyltransferase	other
UniRef90	UHGV-0029936_31	UniRef90_A0A4U8T4F4	105.0	2.28e-25	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0029936_31	537971.HCCG_00428	98.2	1.53e-23	N/A	N/A
structural_annotation	UHGV-0029936_31	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
KOfam	UHGV-0029936_32	K00558	165.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0029936_32	phrog_363	236.6	0	DNA methyltransferase	other
UniRef90	UHGV-0029936_32	UniRef90_G4KRB8	335.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0029936_32	693746.OBV_01900	335.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0029936_32	MTase_II_00058	127.6	1e-37	Type II methyltransferase	RM
Pfam	UHGV-0029936_32	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0029936_32	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0029936_32	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0029936_32	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0029936_33	K00558	44.0	0.0000000000017	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0029936_33	phrog_757	131.0	6e-39	DNA methyltransferase	other
UniRef90	UHGV-0029936_33	UniRef90_A0A844DI13	394.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0029936_33	622312.ROSEINA2194_01264	375.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0029936_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0029936_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0029936_33	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_34	phrog_24518	70.0	3.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0029936_34	693746.OBV_25370	88.6	3.62e-19	N/A	N/A
PHROG	UHGV-0029936_35	phrog_824	150.1	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0029936_35	UniRef90_A0A6N8GXS9	173.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0029936_35	665956.HMPREF1032_00132	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0029936_35	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0029936_45	phrog_643	40.5	0.000000000054	transcriptional regulator	transcription regulation
KOfam	UHGV-0029936_47	K18830	62.2	1.2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0029936_47	phrog_2967	49.5	0.0000000000000099	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029936_47	UniRef90_A0A1Q6RKG1	115.0	1.37e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0029936_47	887325.HMPREF0381_0352	103.0	5.71e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0029936_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029936_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029936_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0029936_48	K19167	124.9	8.4e-37	abiQ; protein AbiQ	N/A
PHROG	UHGV-0029936_48	phrog_9764	140.6	8.09951e-42	N/A	unknown function
UniRef90	UHGV-0029936_48	UniRef90_A0A845R8D8	228.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0029936_48	1519439.JPJG01000060_gene1906	174.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0029936_48	AbiQ	154.2	1.4013e-45	AbiQ	Abi
Pfam	UHGV-0029936_48	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0029936_48	PF13958	N/A	N/A	N/A	N/A
Pfam	UHGV-0029936_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0029936_50	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_51	phrog_353	68.3	7.4e-20	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0029936_51	UniRef90_A0A3E3K2T1	119.0	6.32e-34	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0029936_51	502558.EGYY_24930	110.0	3.44e-31	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0029936_51	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0029936_51	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0029936_51	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_52	phrog_497	69.5	6.2e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0029936_52	UniRef90_UPI0019616193	206.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0029936_52	397287.C807_03671	205.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
COG	UHGV-0029936_52	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0029936_52	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0029936_53	K06400	337.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0029936_53	phrog_95	320.2	0	integrase	integration and excision
UniRef90	UHGV-0029936_53	UniRef90_A0A3A6JR24	345.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0029936_53	665956.HMPREF1032_03589	348.0	0	N/A	N/A
Pfam	UHGV-0029936_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0029936_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0029936_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0029936_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0029936_53	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_54	phrog_199	66.2	3.7e-19	holin	lysis
UniRef90	UHGV-0029936_54	UniRef90_A0A3C0NPD5	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-0029936_54	742738.HMPREF9460_01388	150.0	4.06377e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0029936_54	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0029936_54	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0029936_54	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0029936_54	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0029936_55	phrog_14030	166.4	0	N/A	unknown function
UniRef90	UHGV-0029936_55	UniRef90_A0A316NTC6	217.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029936_55	1121115.AXVN01000051_gene809	189.0	0	NLP P60 protein	N/A
Pfam	UHGV-0029936_55	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0029936_55	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0029936_55	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0029936_55	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A