UHGV-0031920 (vOTU-072977)

Viral Genome: UHGV-0031920

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0031920
vOTU ID	vOTU-072977
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112__NODE_2091_length_61074_cov_6.674869
Associated Biosample	SAMEA4765572
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	98.87 (High-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9673
Viral Hallmark Genes (geNomad)	3
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	38.46
Jumbo Phage?	No

Genome Content
Length (bps)	61,074
GC Content	37.49%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	87
CDS Density	89%
Average CDS Length (bps)	624.76
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0031920_3	K03111	135.4	6.50001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0031920_3	phrog_44	138.2	5.19994e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031920_3	UniRef90_A0A4Q2KCX2	135.0	1.81e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0031920_3	1392491.JIAE01000001_gene2290	104.0	1.04e-26	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0031920_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0031920_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0031920_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0031920_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0031920_3	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_4	phrog_4897	108.6	7.4e-32	kinase	other
UniRef90	UHGV-0031920_4	UniRef90_UPI0004802E43	103.0	1.21e-27	N/A	N/A
eggNOG-mapper	UHGV-0031920_4	500635.MITSMUL_03175	90.9	1.01e-21	N/A	N/A
Pfam	UHGV-0031920_4	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0031920_5	K00571	142.8	3.09967e-42	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0031920_5	phrog_67	129.7	4.9e-40	DNA methyltransferase	other
UniRef90	UHGV-0031920_5	UniRef90_A0A3E3E030	293.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0031920_5	469596.HMPREF9488_00879	221.0	0	DNA methylase	N/A
PADLOC	UHGV-0031920_5	MTase_II_00157	137.7	2.70002e-41	Type II methyltransferase	RM
Pfam	UHGV-0031920_5	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0031920_5	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0031920_5	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_7	phrog_15503	71.1	9.9e-21	N/A	unknown function
UniRef90	UHGV-0031920_7	UniRef90_UPI0012E9BB1B	201.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0031920_7	1560313.A0A0D3MT14_9CAUD	156.0	3.75e-38	N/A	N/A
structural_annotation	UHGV-0031920_7	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_9	phrog_2739	108.9	1.5e-33	portal protein	head and packaging
structural_annotation	UHGV-0031920_9	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_12	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_14	phrog_3313	58.4	2.9e-17	N/A	unknown function
structural_annotation	UHGV-0031920_14	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_16	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_22	TIGR02215	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_24	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_26	phrog_16444	52.5	0.0000000000000035	N/A	unknown function
COG	UHGV-0031920_26	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_26	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_29	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_30	TIGR01725	N/A	N/A	N/A	N/A
KOfam	UHGV-0031920_31	K20283	59.1	1e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0031920_31	phrog_4211	137.4	2.49992e-42	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0031920_31	1291050.JAGE01000002_gene3296	159.0	1.92e-36	Phage-related minor tail protein	N/A
Pfam	UHGV-0031920_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0031920_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0031920_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0031920_31	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_32	PF14870,PF19266,PF19077,PF06051,MF_01348,MF_04116,NF010237,TIGR01633,NF032891,COG4447,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_33	phrog_1887	192.5	0	tail protein	tail
eggNOG-mapper	UHGV-0031920_33	272562.CA_C1114	92.4	1.33e-17	N/A	N/A
structural_annotation	UHGV-0031920_33	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031920_34	742735.HMPREF9467_00718	63.9	0.00000000829	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0031920_34	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0031920_35	phrog_18608	43.2	0.0000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0031920_35	742735.HMPREF9467_00718	59.7	0.0000000287	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0031920_35	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0031920_42	K04763	161.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0031920_42	phrog_1	151.7	7.00649e-45	integrase	integration and excision
UniRef90	UHGV-0031920_42	UniRef90_A0A2V8Q4L1	108.0	7.66e-24	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0031920_42	716544.wcw_0728	91.3	2.25e-18	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids	N/A
Pfam	UHGV-0031920_42	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0031920_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031920_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0031920_42	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031920_44	PF04347	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_45	phrog_8684	84.2	2.7e-27	N/A	unknown function
UniRef90	UHGV-0031920_45	UniRef90_A0A350XVA9	92.8	1.1e-21	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_45	1121097.JCM15093_2710	88.2	1.58e-20	YopX protein	N/A
Pfam	UHGV-0031920_45	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0031920_45	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0031920_45	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031920_49	1163671.JAGI01000002_gene1246	110.0	1.16e-28	N/A	N/A
KOfam	UHGV-0031920_53	K22300	45.9	0.0000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0031920_53	phrog_8	60.5	3.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031920_53	UniRef90_B0K4S0	67.8	0.0000000000122	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-0031920_53	608506.COB47_1787	65.9	0.0000000000969	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0031920_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031920_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0031920_54	K14059	182.6	0	int; integrase	N/A
PHROG	UHGV-0031920_54	phrog_1	166.0	0	integrase	integration and excision
UniRef90	UHGV-0031920_54	UniRef90_A0A353EXX9	399.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_54	469618.FVAG_01276	147.0	2.4e-38	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0031920_54	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0031920_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031920_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031920_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031920_56	UniRef90_A0A354UMM3	148.0	3.71344e-43	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_56	663278.Ethha_2212	55.1	0.000000117	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0031920_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031920_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0031920_56	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_58	phrog_23933	91.2	7.3e-27	N/A	unknown function
UniRef90	UHGV-0031920_58	UniRef90_R7JBB8	88.2	1.7e-16	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	N/A
eggNOG-mapper	UHGV-0031920_58	1292035.H476_1482	79.0	0.0000000000000557	N/A	N/A
Pfam	UHGV-0031920_58	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0031920_61	K22299	51.5	0.000000000000022	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0031920_61	phrog_8	56.0	9.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031920_61	UniRef90_A0A1Y4UXR3	68.9	0.0000000000000949	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031920_61	1232453.BAIF02000013_gene3257	63.5	0.00000000000284	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0031920_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031920_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031920_61	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_63	phrog_11769	125.6	2.9e-37	N/A	unknown function
UniRef90	UHGV-0031920_63	UniRef90_A0A7X7IF01	113.0	2.04e-25	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_63	1035189.HMPREF9954_1960	105.0	1.1e-23	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0031920_63	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0031920_63	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0031920_63	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0031920_63	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_66	phrog_4973	41.3	0.00000000002	N/A	unknown function
Pfam	UHGV-0031920_66	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
PHROG	UHGV-0031920_67	phrog_434	121.3	9.2e-36	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031920_67	UniRef90_A0A3A6C8C7	140.0	2.94e-38	Recombinase	N/A
eggNOG-mapper	UHGV-0031920_67	888055.HMPREF9015_01894	85.1	1.75e-17	YqaJ viral recombinase family	N/A
Pfam	UHGV-0031920_67	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0031920_67	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0031920_67	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0031920_67	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0031920_69	K24213	49.9	0.000000000000038	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0031920_69	phrog_4433	83.7	4.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0031920_69	886882.PPSC2_p0048	114.0	1.88e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0031920_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0031920_69	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_70	phrog_674	118.2	6.4e-35	N/A	unknown function
UniRef90	UHGV-0031920_70	UniRef90_UPI0018ABB762	90.9	1.33e-17	N/A	N/A
eggNOG-mapper	UHGV-0031920_70	742740.HMPREF9474_03487	73.2	0.00000000000513	N/A	N/A
Pfam	UHGV-0031920_70	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0031920_70	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0031920_71	K07455	162.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0031920_71	phrog_148	182.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031920_71	UniRef90_R6LL98	216.0	0	Phage RecT family recombinase	N/A
eggNOG-mapper	UHGV-0031920_71	1408437.JNJN01000039_gene372	193.0	0	RecT family	N/A
Pfam	UHGV-0031920_71	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0031920_71	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0031920_71	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0031920_71	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031920_73	UniRef90_A0A5D8QH37	60.8	0.00000000893	N/A	N/A
structural_annotation	UHGV-0031920_73	PF18892	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_75	phrog_1040	71.2	1.5e-20	peptidase HslV family	other
eggNOG-mapper	UHGV-0031920_75	32057.KB217478_gene2365	115.0	2.7e-30	N/A	N/A
structural_annotation	UHGV-0031920_75	PF00227,MF_00248,TIGR03634,COG5405	N/A	N/A	N/A	N/A
KOfam	UHGV-0031920_77	K04763	131.6	7.7e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0031920_77	phrog_1	113.5	2.4e-33	integrase	integration and excision
UniRef90	UHGV-0031920_77	UniRef90_A0A5M8BVY8	182.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0031920_77	1121098.HMPREF1534_00499	176.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0031920_77	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031920_77	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
Pfam	UHGV-0031920_78	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0031920_79	phrog_190	123.6	1.3e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031920_79	UniRef90_UPI000C817A46	109.0	4.73e-28	N/A	N/A
eggNOG-mapper	UHGV-0031920_79	445974.CLORAM_02947	89.4	9.37e-21	N/A	N/A
Pfam	UHGV-0031920_79	PF06356	N/A	N/A	N/A	DUF1064
KOfam	UHGV-0031920_80	K00390	123.3	1.3e-36	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0031920_80	phrog_424	133.9	1e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0031920_80	UniRef90_A0A0D8IXI8	199.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_80	411490.ANACAC_02386	193.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0031920_80	BrxP_00001	82.1	1.5e-24	BrxP	BREX
Pfam	UHGV-0031920_80	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0031920_80	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0031920_80	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_84	phrog_8684	93.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-0031920_84	UniRef90_A0A7X7ZBD2	90.1	1.19e-20	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0031920_84	742767.HMPREF9456_02048	86.7	5.18e-20	YopX protein	N/A
Pfam	UHGV-0031920_84	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0031920_84	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0031920_84	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0031920_87	phrog_3136	81.8	7e-24	N/A	unknown function
UniRef90	UHGV-0031920_87	UniRef90_A0A3D0HBD2	92.0	3.45e-20	ASCH domain-containing protein	N/A
structural_annotation	UHGV-0031920_87	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A