UHGV-0031936 (vOTU-044180)

Viral Genome: UHGV-0031936

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0031936
vOTU ID	vOTU-044180
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_22_1655__NODE_1841_length_40985_cov_5.791288
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	12
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9628
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	23.81
Jumbo Phage?	No

Genome Content
Length (bps)	40,945
GC Content	41.80%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	68
CDS Density	92%
Average CDS Length (bps)	553.02
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0031936_1	phrog_4433	75.4	8.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0031936_1	886882.PPSC2_p0048	99.4	1.41e-22	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0031936_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0031936_4	K18830	44.4	0.0000000000039	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0031936_4	UniRef90_A0A3C2DW28	114.0	1.06e-31	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0031936_4	1246448.ANAZ01000008_gene2507	53.5	0.000000159	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0031936_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0031936_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031936_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_6	K07729	45.4	0.0000000000016	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0031936_6	phrog_3	40.8	0.000000000079	transcriptional repressor	transcription regulation
UniRef90	UHGV-0031936_6	UniRef90_A0A3C2DVT6	65.5	0.00000000000127	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031936_6	717605.Theco_0932	46.6	0.00000682	Helix-turn-helix	N/A
Pfam	UHGV-0031936_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031936_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0031936_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_7	K22300	53.3	0.0000000000000063	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0031936_7	phrog_8	52.5	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031936_7	UniRef90_A0A3C2DVT6	95.5	1.13e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031936_7	1005704.HMPREF9968_1459	48.9	0.00000608	Peptidase S24-like	N/A
Pfam	UHGV-0031936_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031936_7	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0031936_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_10	K22299	43.5	0.0000000000055	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0031936_10	phrog_8	40.5	0.000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031936_10	UniRef90_A0A2Z4GUA9	60.5	0.0000000016	Helix-turn-helix XRE-family like protein	N/A
eggNOG-mapper	UHGV-0031936_10	558169.AGAV01000019_gene3220	50.1	0.0000027	transcriptional	N/A
Pfam	UHGV-0031936_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031936_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031936_10	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_11	phrog_4085	56.9	3.4e-16	N/A	unknown function
UniRef90	UHGV-0031936_11	UniRef90_A0A316SCS9	76.6	6.6e-17	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031936_11	1123511.KB905839_gene496	74.7	6.22e-17	N/A	N/A
Pfam	UHGV-0031936_11	PF19807	N/A	N/A	N/A	DUF6290
structural_annotation	UHGV-0031936_11	PF19807,NF041418,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_12	K06218	76.8	5.9e-22	relE, stbE; mRNA interferase RelE/StbE	N/A
PHROG	UHGV-0031936_12	phrog_1213	82.8	3.6e-24	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0031936_12	UniRef90_A0A3D0XZ19	122.0	1.74e-34	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
eggNOG-mapper	UHGV-0031936_12	1095750.HMPREF9970_0882	114.0	3.06e-32	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-0031936_12	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
NCBIFam	UHGV-0031936_12	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0031936_12	COG2026	N/A	N/A	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	N/A
structural_annotation	UHGV-0031936_12	PF05016,TIGR00053,COG2026	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031936_14	UniRef90_A0A354UMM3	172.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0031936_14	1410631.JHWZ01000001_gene1054	52.0	0.00000514	Putative restriction endonuclease	N/A
Pfam	UHGV-0031936_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031936_14	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0031936_14	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_15	K14059	136.7	2.8e-40	int; integrase	N/A
PHROG	UHGV-0031936_15	phrog_1	128.9	4.7e-38	integrase	integration and excision
UniRef90	UHGV-0031936_15	UniRef90_A0A354UN09	657.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0031936_15	469618.FVAG_01276	117.0	1.46e-26	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0031936_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031936_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031936_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0031936_18	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0031936_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_21	phrog_16490	43.7	0.0000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0031936_21	641112.ACOK01000103_gene525	85.1	1.25e-17	N/A	N/A
PHROG	UHGV-0031936_23	phrog_21718	44.3	0.0000000000027	N/A	unknown function
structural_annotation	UHGV-0031936_28	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031936_30	PF04721,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_31	phrog_38707	48.2	0.000000000000076	N/A	unknown function
eggNOG-mapper	UHGV-0031936_31	552398.HMPREF0866_01593	122.0	4.01e-27	tail collar domain protein	N/A
COG	UHGV-0031936_31	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0031936_32	PF14594,TIGR01646,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031936_36	PF06199,PF08873,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031936_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_40	phrog_422	293.6	0	major head protein	head and packaging
UniRef90	UHGV-0031936_40	UniRef90_A0A3C2DU69	577.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0031936_40	545697.HMPREF0216_02849	348.0	0	N/A	N/A
structural_annotation	UHGV-0031936_40	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_41	phrog_194	94.4	1.4e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0031936_41	UniRef90_UPI0001E39A27	80.9	0.00000000000000279	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0031936_41	1444310.JANV01000162_gene1175	52.8	0.0000069	Phage minor structural protein GP20	N/A
Pfam	UHGV-0031936_41	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0031936_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_43	phrog_581	85.5	8.4e-25	minor head protein	head and packaging
eggNOG-mapper	UHGV-0031936_43	1160721.RBI_II00541	66.6	0.000000013	N/A	N/A
Pfam	UHGV-0031936_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0031936_43	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_44	phrog_533	159.6	0	portal protein	head and packaging
UniRef90	UHGV-0031936_44	UniRef90_A0A345BNV5	412.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-0031936_44	33035.JPJF01000093_gene2257	103.0	2.09e-20	N/A	N/A
structural_annotation	UHGV-0031936_44	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_45	K06909	67.1	2.9e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0031936_45	phrog_2	53.7	0.0000000000000043	terminase large subunit	head and packaging
UniRef90	UHGV-0031936_45	UniRef90_A0A345BNW5	434.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0031936_45	552396.HMPREF0863_01628	115.0	3.83e-25	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0031936_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0031936_46	PF07141,NF012144	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_47	K00571	90.9	1.6e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0031936_47	phrog_498	295.7	0	DNA methyltransferase	other
UniRef90	UHGV-0031936_47	UniRef90_A0A6J5KJQ5	348.0	0	DNA methylase N-4/N-6	N/A
eggNOG-mapper	UHGV-0031936_47	1423758.BN55_01455	243.0	0	DNA methylase	N/A
PADLOC	UHGV-0031936_47	MTase_II_00015	130.8	0	Type II methyltransferase	RM
Pfam	UHGV-0031936_47	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0031936_47	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0031936_47	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0031936_47	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_48	phrog_36	44.7	0.0000000000018	transcriptional regulator	transcription regulation
PHROG	UHGV-0031936_49	phrog_478	71.8	7.6e-21	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0031936_49	1123302.KB904167_gene507	69.7	0.000000000000188	N/A	N/A
structural_annotation	UHGV-0031936_51	PF10842,MF_00436,NF011232,COG1923	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031936_54	PF18350,MF_01354,TIGR00405,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_55	K00558	177.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0031936_55	phrog_116	195.2	0	DNA methyltransferase	other
UniRef90	UHGV-0031936_55	UniRef90_R9KEA8	298.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0031936_55	397290.C810_05213	298.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0031936_55	MTase_II_00058	182.2	0	Type II methyltransferase	RM
Pfam	UHGV-0031936_55	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0031936_55	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0031936_55	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0031936_55	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_61	phrog_2562	123.4	1.9e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031936_61	UniRef90_A0A3D4VRX2	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0031936_61	910314.HMPREF9220_1107	82.4	6.07e-16	N/A	N/A
Pfam	UHGV-0031936_61	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0031936_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0031936_61	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_62	phrog_190	92.8	3.4e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031936_62	UniRef90_UPI000C817A46	121.0	2.86e-33	N/A	N/A
eggNOG-mapper	UHGV-0031936_62	445974.CLORAM_02947	107.0	2.41e-28	N/A	N/A
Pfam	UHGV-0031936_62	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0031936_62	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0031936_63	K03111	144.9	7.90332e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0031936_63	phrog_44	140.7	8.59977e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031936_63	UniRef90_R7FWV6	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0031936_63	264732.Moth_0129	122.0	1.4e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0031936_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0031936_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0031936_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0031936_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0031936_63	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_66	phrog_1366	281.8	0	N/A	unknown function
UniRef90	UHGV-0031936_66	UniRef90_A0A850RF01	285.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0031936_66	1123288.SOV_1c03840	268.0	0	AAA domain	N/A
Pfam	UHGV-0031936_66	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0031936_66	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0031936_66	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0031936_68	phrog_27197	56.5	4.5e-16	N/A	unknown function
COG	UHGV-0031936_68	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0031936_68	NF007410	N/A	N/A	N/A	N/A