UHGV-0033190 (vOTU-073209)

Viral Genome: UHGV-0033190

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0033190
vOTU ID	vOTU-073209
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112__NODE_4063_length_39321_cov_5.822674
Associated Biosample	SAMEA4765572
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	91.29 (High-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9682
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	34.3
Jumbo Phage?	No

Genome Content
Length (bps)	39,321
GC Content	55.05%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	92%
Average CDS Length (bps)	602.90
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0033190_2	phrog_1330	97.7	6.2e-29	tail protein	tail
eggNOG-mapper	UHGV-0033190_2	1507.HMPREF0262_01189	111.0	4.44e-22	Phage minor structural protein	N/A
Pfam	UHGV-0033190_2	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
COG	UHGV-0033190_2	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0033190_3	phrog_1194	68.6	8.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0033190_3	1280692.AUJL01000027_gene2149	62.8	0.0000000000513	N/A	N/A
structural_annotation	UHGV-0033190_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_4	phrog_58	76.6	3.9e-22	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0033190_4	742733.HMPREF9469_01814	78.6	0.00000000000704	tape measure	N/A
COG	UHGV-0033190_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
eggNOG-mapper	UHGV-0033190_5	1121333.JMLH01000047_gene1011	70.5	0.000000000000116	N/A	N/A
UniRef90	UHGV-0033190_6	UniRef90_A0A496N7D3	89.0	7.98e-21	N/A	N/A
eggNOG-mapper	UHGV-0033190_6	1123263.AUKY01000015_gene1618	70.9	0.0000000000000172	N/A	N/A
Pfam	UHGV-0033190_6	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0033190_6	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_7	phrog_158	50.2	0.000000000000051	major tail protein	tail
UniRef90	UHGV-0033190_7	UniRef90_UPI00189AB4AD	101.0	1.04e-24	phage tail protein	N/A
eggNOG-mapper	UHGV-0033190_7	1209989.TepiRe1_1157	57.4	0.000000022	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0033190_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033190_8	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033190_9	476272.RUMHYD_01963	71.6	0.000000000000309	N/A	N/A
structural_annotation	UHGV-0033190_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033190_11	UniRef90_D7GNV9	115.0	2.34e-31	Phage QLRG family, putative DNA packaging	N/A
structural_annotation	UHGV-0033190_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_12	phrog_422	241.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0033190_12	693746.OBV_18090	370.0	0	N/A	N/A
structural_annotation	UHGV-0033190_12	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_13	phrog_172	122.5	3.9e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-0033190_13	UniRef90_UPI001D0601C7	88.2	2.95e-18	N/A	N/A
eggNOG-mapper	UHGV-0033190_13	1235800.C819_00486	89.4	4.6e-19	N/A	N/A
Pfam	UHGV-0033190_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0033190_13	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_14	phrog_115	105.1	4.9e-31	minor head protein	head and packaging
UniRef90	UHGV-0033190_14	UniRef90_A0A0D1YAY0	86.3	0.0000000000000017	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0033190_14	649747.HMPREF0083_05316	87.4	1.2e-16	Phage Mu protein F like protein	N/A
Pfam	UHGV-0033190_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0033190_14	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0033190_14	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_15	phrog_64	401.8	0	portal protein	head and packaging
UniRef90	UHGV-0033190_15	UniRef90_UPI000428C796	340.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0033190_15	1121947.AUHK01000002_gene930	340.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0033190_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0033190_15	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0033190_15	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_16	K06909	361.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0033190_16	phrog_3717	181.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033190_16	UniRef90_UPI001B10AB40	478.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0033190_16	1567012.A0A0A7RTE7_9VIRU	460.0	0	Pfam:Terminase_3C	N/A
Pfam	UHGV-0033190_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0033190_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0033190_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0033190_16	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_18	K09125	194.6	0	yhhQ; queuosine precursor transporter	N/A
PHROG	UHGV-0033190_18	phrog_4899	138.0	5.60001e-41	N/A	unknown function
UniRef90	UHGV-0033190_18	UniRef90_A0A7C6S6Q5	271.0	0	Probable queuosine precursor transporter	N/A
eggNOG-mapper	UHGV-0033190_18	1410638.JHXJ01000005_gene2208	149.0	3.40936e-42	Putative vitamin uptake transporter	N/A
Pfam	UHGV-0033190_18	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
NCBIFam	UHGV-0033190_18	TIGR00697.1	N/A	N/A	queuosine precursor transporter	N/A
COG	UHGV-0033190_18	COG1738	N/A	N/A	N/A	N/A
HAMAP	UHGV-0033190_18	MF_02088	N/A	N/A	Probable queuosine precursor transporter	N/A
structural_annotation	UHGV-0033190_18	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_19	phrog_5935	84.9	9.6e-25	N/A	unknown function
UniRef90	UHGV-0033190_19	UniRef90_A0A5B8N9U6	106.0	5.95e-27	Peroxide stress protein YaaA	N/A
eggNOG-mapper	UHGV-0033190_19	706436.HMPREF9074_08106	106.0	1.54e-25	N/A	N/A
Pfam	UHGV-0033190_19	PF21818	N/A	N/A	N/A	DUF6884
structural_annotation	UHGV-0033190_19	PF21818,MF_00652,NF002542,COG3022	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_20	phrog_887	164.1	0	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0033190_20	UniRef90_R6N9F6	208.0	0	Mycobacteriophage GP2 protein	N/A
eggNOG-mapper	UHGV-0033190_20	445970.ALIPUT_02667	252.0	0	N/A	N/A
structural_annotation	UHGV-0033190_20	PF00290,MF_01634,TIGR00432,COG0269	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_21	K03497	74.7	2.2e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0033190_21	phrog_620	178.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033190_21	UniRef90_A0A2N5KYN6	181.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0033190_21	1423758.BN55_01455	178.0	0	DNA methylase	N/A
PADLOC	UHGV-0033190_21	MTase_II_00015	93.8	3e-27	Type II methyltransferase	RM
Pfam	UHGV-0033190_21	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0033190_21	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0033190_22	phrog_36	54.3	0.0000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033190_22	UniRef90_A0A3D3FGT2	58.9	0.0000000419	Sigma70_r4 domain-containing protein	N/A
COG	UHGV-0033190_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0033190_22	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033190_23	COG4451	N/A	N/A	N/A	N/A
UniRef90	UHGV-0033190_25	UniRef90_A0A1Q9JGI6	119.0	2.28e-31	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033190_25	1321782.HMPREF1986_00338	97.4	1.9e-23	N/A	N/A
Pfam	UHGV-0033190_26	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0033190_29	phrog_757	180.8	0	DNA methyltransferase	other
UniRef90	UHGV-0033190_29	UniRef90_UPI00189BA758	323.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0033190_29	397290.C810_01487	315.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0033190_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0033190_29	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_32	phrog_4433	142.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0033190_32	665950.HMPREF1025_01373	126.0	2.79e-31	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0033190_32	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0033190_33	K01160	56.0	0.0000000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0033190_33	phrog_140	120.9	8.7e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033190_33	UniRef90_UPI001F3FED15	135.0	3.49e-38	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0033190_33	1437882.AZRU01000034_gene470	122.0	1.15e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0033190_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0033190_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0033190_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_34	phrog_15768	116.9	9.5e-35	N/A	unknown function
UniRef90	UHGV-0033190_34	UniRef90_UPI00195DC091	114.0	3.36e-27	N/A	N/A
eggNOG-mapper	UHGV-0033190_34	888059.HMPREF9071_2112	99.4	3.57e-22	N/A	N/A
Pfam	UHGV-0033190_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0033190_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_35	K03111	118.9	7.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0033190_35	phrog_44	119.9	2.2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033190_35	UniRef90_A0A645IP15	134.0	2.24e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0033190_35	358681.BBR47_59230	104.0	1.76e-26	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0033190_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0033190_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0033190_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0033190_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0033190_35	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033190_36	596152.DesU5LDRAFT_1910	90.9	8.09e-20	N/A	N/A
structural_annotation	UHGV-0033190_36	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_37	phrog_155	119.8	2.5e-35	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033190_37	UniRef90_UPI000834FCC7	202.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0033190_37	357809.Cphy_2988	192.0	0	ERF superfamily	N/A
Pfam	UHGV-0033190_37	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0033190_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0033190_37	PF04404,TIGR00607,COG4319	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_38	phrog_2205	134.7	2.6e-40	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033190_38	UniRef90_A0A843J181	148.0	1.32002e-42	Host-nuclease inhibitor Gam family protein	N/A
eggNOG-mapper	UHGV-0033190_38	697281.Mahau_0089	135.0	2.92e-38	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0033190_38	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0033190_38	PF07352	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_44	K18830	58.8	1.2e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0033190_44	phrog_2328	49.2	0.000000000000063	transcriptional repressor	transcription regulation
UniRef90	UHGV-0033190_44	UniRef90_A0A416ZRZ3	71.6	0.000000000000141	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0033190_44	1321784.HMPREF1987_01098	64.7	0.0000000000114	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0033190_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0033190_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0033190_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033190_47	693746.OBV_10700	83.2	6.35e-19	N/A	N/A
structural_annotation	UHGV-0033190_48	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0033190_49	K14059	101.7	1.2e-29	int; integrase	N/A
PHROG	UHGV-0033190_49	phrog_1	111.9	7.2e-33	integrase	integration and excision
UniRef90	UHGV-0033190_49	UniRef90_UPI001874116E	291.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0033190_49	1238184.CM001792_gene62	97.1	9.05e-20	Phage integrase family	N/A
Pfam	UHGV-0033190_49	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0033190_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033190_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033190_49	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_53	phrog_8	40.6	1.2e-32	transcriptional regulator	transcription regulation
Pfam	UHGV-0033190_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0033190_53	PF18488	N/A	N/A	WYL domain	WYL_3
Pfam	UHGV-0033190_53	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
NCBIFam	UHGV-0033190_53	TIGR04111.1	N/A	N/A	phage-associated protein, BcepMu gp16 family	N/A
COG	UHGV-0033190_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0033190_54	K07684	42.3	0.000000000012	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0033190_54	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0033190_54	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0033190_54	PF00196,MF_00674,TIGR02985,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033190_55	411470.RUMGNA_00254	95.9	1.86e-24	N/A	N/A
KOfam	UHGV-0033190_57	K21471	47.9	0.00000000000033	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0033190_57	phrog_1493	49.6	0.000000000000048	endolysin	lysis
UniRef90	UHGV-0033190_57	UniRef90_A0A7V6H3L9	150.0	4.38e-40	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033190_57	986075.CathTA2_0160	59.3	0.0000000961	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0033190_57	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0033190_57	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0033190_57	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0033190_57	PF01471,PF00877,TIGR02869,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033190_59	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0033190_60	phrog_18593	53.7	0.0000000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0033190_60	411460.RUMTOR_02099	57.4	0.000000114	N/A	N/A