UHGV-0033749 (vOTU-088646)

Viral Genome: UHGV-0033749

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0033749
vOTU ID	vOTU-088646
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_4_1166__NODE_3006_length_34731_cov_15.217983
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	83.18 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	19
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9776
Viral Hallmark Genes (geNomad)	12
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	45.07
Jumbo Phage?	No

Genome Content
Length (bps)	34,731
GC Content	38.56%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	45
CDS Density	90%
Average CDS Length (bps)	693.07
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0033749_1	K14059	91.3	1.8e-26	int; integrase	N/A
PHROG	UHGV-0033749_1	phrog_1	123.4	2.5e-36	integrase	integration and excision
UniRef90	UHGV-0033749_1	UniRef90_H7BVF7	634.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_1	742740.HMPREF9474_02388	634.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033749_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033749_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033749_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_2	phrog_17658	63.0	5e-18	N/A	unknown function
UniRef90	UHGV-0033749_2	UniRef90_UPI0014004675	72.8	0.000000000000699	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_2	1292035.H476_0995	63.5	0.000000000237	N/A	N/A
structural_annotation	UHGV-0033749_2	PF18116	N/A	N/A	N/A	N/A
KOfam	UHGV-0033749_4	K18830	76.4	4.4e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0033749_4	phrog_8	57.1	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033749_4	UniRef90_UPI0006BF92BD	239.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_4	445972.ANACOL_03315	156.0	0	N/A	N/A
Pfam	UHGV-0033749_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0033749_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0033749_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_7	phrog_15968	42.2	0.000000000011	anti-repressor	transcription regulation
UniRef90	UHGV-0033749_7	UniRef90_UPI001C1F9D25	48.1	0.00000432	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_7	568816.Acin_1403	67.8	0.00000000000071	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0033749_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0033749_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0033749_8	PF18330,NF007435,COG3691	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_9	phrog_6058	49.8	0.000000000000015	N/A	unknown function
UniRef90	UHGV-0033749_9	UniRef90_A0A374E7W1	261.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0033749_9	742740.HMPREF9474_02381	167.0	0	N/A	N/A
Pfam	UHGV-0033749_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0033749_9	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_10	phrog_14105	276.0	0	N/A	unknown function
UniRef90	UHGV-0033749_10	UniRef90_UPI0018A0DC22	259.0	0	PPE family protein	N/A
eggNOG-mapper	UHGV-0033749_10	742740.HMPREF9474_02378	205.0	0	dextransucrase activity	N/A
Pfam	UHGV-0033749_10	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0033749_10	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0033749_11	K14440	105.7	2.9e-31	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0033749_11	phrog_62	206.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033749_11	UniRef90_A0A849XTM5	902.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0033749_11	742740.HMPREF9474_02377	707.0	0	snf2 family	N/A
PADLOC	UHGV-0033749_11	DpdE_00006	46.3	0.00000000000026	DpdE	DPD
Pfam	UHGV-0033749_11	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-0033749_11	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0033749_11	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0033749_13	K03698	50.3	0.000000000000034	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0033749_13	phrog_5889	78.9	4.5e-23	N/A	unknown function
UniRef90	UHGV-0033749_13	UniRef90_UPI001C01F314	228.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_13	742740.HMPREF9474_02372	218.0	0	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
COG	UHGV-0033749_13	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0033749_13	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_16	phrog_2872	222.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033749_16	UniRef90_UPI001C017367	586.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0033749_16	742740.HMPREF9474_02369	608.0	0	AAA domain	N/A
structural_annotation	UHGV-0033749_16	PF13479,MF_00350,TIGR01618,COG2087	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_17	phrog_7778	114.8	5.9e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033749_17	UniRef90_A0A374E7W5	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0033749_17	742740.HMPREF9474_02367	196.0	0	N/A	N/A
Pfam	UHGV-0033749_17	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0033749_17	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_18	phrog_1252	414.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033749_18	UniRef90_A0A1G5G0M3	509.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0033749_18	742740.HMPREF9474_02366	1052.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-0033749_18	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0033749_18	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033749_19	PF05384,NF041271,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-0033749_20	K06919	62.5	5.5e-18	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0033749_20	phrog_864	425.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033749_20	UniRef90_A0A374E6H3	1236.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0033749_20	742740.HMPREF9474_02364	999.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0033749_20	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0033749_20	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0033749_20	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0033749_20	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0033749_20	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0033749_20	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_22	phrog_22292	80.9	4e-25	N/A	unknown function
PHROG	UHGV-0033749_23	phrog_6568	69.5	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0033749_23	1203606.HMPREF1526_00241	62.4	0.00000000000355	N/A	N/A
PHROG	UHGV-0033749_24	phrog_36	46.4	0.00000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033749_24	UniRef90_A0A8G8VEZ3	52.8	0.00000722	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_24	742740.HMPREF9474_02360	196.0	0	N/A	N/A
structural_annotation	UHGV-0033749_24	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0033749_25	K07474	164.0	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0033749_25	phrog_51	157.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0033749_25	UniRef90_A0A415N140	323.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0033749_25	1321778.HMPREF1982_02686	189.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0033749_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0033749_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0033749_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0033749_26	K06909	423.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0033749_26	phrog_3717	255.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033749_26	UniRef90_A0A374E8M6	867.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0033749_26	887325.HMPREF0381_0087	649.0	0	Terminase-like family	N/A
Pfam	UHGV-0033749_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0033749_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0033749_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0033749_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-0033749_26	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0033749_26	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_27	phrog_1233	52.2	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0033749_27	397290.C810_01336	50.1	0.00000255	N/A	N/A
structural_annotation	UHGV-0033749_27	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_28	phrog_64	260.2	0	portal protein	head and packaging
UniRef90	UHGV-0033749_28	UniRef90_A0A374E6B1	967.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0033749_28	1256908.HMPREF0373_00485	615.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0033749_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0033749_28	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_29	phrog_595	177.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0033749_29	UniRef90_A0A415N157	586.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_29	1256908.HMPREF0373_00484	375.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0033749_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0033749_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033749_29	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_30	phrog_194	78.2	1e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0033749_30	UniRef90_UPI001373E5C4	176.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0033749_30	1235800.C819_02235	114.0	5.57e-29	Phage minor structural protein GP20	N/A
Pfam	UHGV-0033749_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0033749_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_31	phrog_247	217.1	0	major head protein	head and packaging
UniRef90	UHGV-0033749_31	UniRef90_UPI001BA5448B	259.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0033749_31	33035.JPJF01000106_gene3132	365.0	0	N/A	N/A
structural_annotation	UHGV-0033749_31	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_32	phrog_1236	179.4	0	head protein	head and packaging
eggNOG-mapper	UHGV-0033749_32	1235800.C819_02232	196.0	0	N/A	N/A
structural_annotation	UHGV-0033749_32	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_33	phrog_1059	48.1	3.3e-26	head-tail adaptor	connector
UniRef90	UHGV-0033749_33	UniRef90_UPI00156E52AA	169.0	0	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0033749_33	1235800.C819_02231	132.0	6.27e-38	N/A	N/A
structural_annotation	UHGV-0033749_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_34	phrog_5	44.8	0.0000000000032	tail completion or Neck1 protein	connector
UniRef90	UHGV-0033749_34	UniRef90_A0A415N123	277.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0033749_34	1256908.HMPREF0373_00473	139.0	1.96e-40	N/A	N/A
Pfam	UHGV-0033749_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0033749_35	phrog_957	45.6	0.0000000000011	head protein	head and packaging
structural_annotation	UHGV-0033749_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_36	phrog_885	164.6	0	major tail protein	tail
eggNOG-mapper	UHGV-0033749_36	1235800.C819_02228	100.0	3.26e-23	N/A	N/A
structural_annotation	UHGV-0033749_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_38	phrog_1021	50.0	0.000000000000034	N/A	unknown function
KOfam	UHGV-0033749_39	K06240	54.2	1.3e-16	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-0033749_39	phrog_58	383.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0033749_39	742765.HMPREF9457_02136	255.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0033749_39	PF21769	N/A	N/A	Virion DNA-directed RNA polymerase domain	vRNAP_dom
Pfam	UHGV-0033749_39	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
COG	UHGV-0033749_39	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_40	phrog_33	52.2	0.000000000000015	distal tail protein Dit	tail
UniRef90	UHGV-0033749_40	UniRef90_A0A414P9H2	199.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0033749_40	411468.CLOSCI_02410	177.0	0	N/A	N/A
structural_annotation	UHGV-0033749_40	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_41	phrog_538	205.5	0	minor tail protein	tail
UniRef90	UHGV-0033749_41	UniRef90_A0A1C5PP83	260.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0033749_41	1256908.HMPREF0373_00466	255.0	0	N/A	N/A
Pfam	UHGV-0033749_41	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0033749_41	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_42	phrog_9994	173.2	0	N/A	unknown function
UniRef90	UHGV-0033749_42	UniRef90_UPI000C76CD77	136.0	3.45e-35	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0033749_42	411468.CLOSCI_00275	125.0	1.27e-31	N/A	N/A
structural_annotation	UHGV-0033749_42	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0033749_43	phrog_12931	66.3	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0033749_43	742765.HMPREF9457_03370	56.6	0.0000000175	N/A	N/A
structural_annotation	UHGV-0033749_43	PF17642	N/A	N/A	N/A	N/A