UHGV-0035005 (vOTU-044416)

Viral Genome: UHGV-0035005

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0035005
vOTU ID	vOTU-044416
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_2_2185__NODE_723_length_54306_cov_8.831769
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	3
Recoded?	No

Viral Content
geNomad score	0.9723
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	15.89
Jumbo Phage?	No

Genome Content
Length (bps)	54,229
GC Content	43.35%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	62
CDS Density	95%
Average CDS Length (bps)	829.89
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035005_4	phrog_31398	41.9	0.0000000000081	N/A	unknown function
Pfam	UHGV-0035005_4	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
KOfam	UHGV-0035005_5	K17256	45.3	0.00000000000042	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0035005_5	phrog_35892	98.9	2.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0035005_5	665956.HMPREF1032_03261	80.9	0.00000000000034	N/A	N/A
Pfam	UHGV-0035005_5	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0035005_5	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0035005_6	PF09144,NF038393	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_10	phrog_511	56.6	3.5e-16	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0035005_10	1519439.JPJG01000060_gene1903	85.5	0.0000000000000164	N/A	N/A
structural_annotation	UHGV-0035005_10	PF11134,MF_00923,NF010237,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035005_11	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_13	phrog_14242	53.4	2.2e-30	major head protein	head and packaging
UniRef90	UHGV-0035005_13	UniRef90_A0A355JD53	486.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0035005_13	588581.Cpap_1528	148.0	1.01e-37	N/A	N/A
NCBIFam	UHGV-0035005_13	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0035005_13	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_15	phrog_156	108.5	3.1e-32	portal protein	head and packaging
eggNOG-mapper	UHGV-0035005_15	588581.Cpap_1526	342.0	0	N/A	N/A
structural_annotation	UHGV-0035005_15	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_18	K06909	138.5	5.99994e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0035005_18	phrog_979	167.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035005_18	UniRef90_A0A355JD48	657.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035005_18	1232449.BAHV02000016_gene1824	447.0	0	N/A	N/A
Pfam	UHGV-0035005_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0035005_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0035005_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035005_19	PF06056,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_20	K14059	199.7	0	int; integrase	N/A
PHROG	UHGV-0035005_20	phrog_1	184.5	0	integrase	integration and excision
UniRef90	UHGV-0035005_20	UniRef90_A0A7X5KR99	260.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0035005_20	1045004.OKIT_0416	118.0	2.03e-27	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035005_20	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0035005_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035005_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035005_20	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0035005_21	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0035005_22	UniRef90_E4KXC0	91.7	1.28e-18	Copper amine oxidase N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0035005_22	203119.Cthe_3188	108.0	5.25e-24	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-0035005_22	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0035005_22	COG1555	N/A	N/A	DNA uptake protein ComE or related DNA-binding protein	N/A
Pfam	UHGV-0035005_24	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0035005_24	PF13058,PF02805,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_25	phrog_8	60.5	3.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035005_25	UniRef90_A0A658JJ51	75.9	0.0000000000000307	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0035005_25	742733.HMPREF9469_04846	78.2	1.85e-16	sequence-specific DNA binding	N/A
COG	UHGV-0035005_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035005_32	COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_33	K19789	239.1	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0035005_33	phrog_16	231.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035005_33	UniRef90_UPI000B340F5B	191.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0035005_33	314262.MED193_18714	177.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0035005_33	mREase_IV_00004	92.7	3.3e-27	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0035005_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0035005_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0035005_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0035005_33	PF04851,PF00271,MF_00967,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_34	phrog_398	194.2	0	N/A	unknown function
UniRef90	UHGV-0035005_34	UniRef90_A0A1M7MXJ5	194.0	0	Putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0035005_34	293826.Amet_2584	190.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0035005_34	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0035005_34	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_37	K03111	136.2	3.3e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035005_37	phrog_44	144.4	6.09565e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035005_37	UniRef90_UPI001CF8FEA9	179.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035005_37	509191.AEDB02000052_gene1361	124.0	1.38e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0035005_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035005_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035005_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035005_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035005_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_38	K22300	67.0	3.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0035005_38	phrog_8	72.9	5.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035005_38	UniRef90_A0A4Q7PMH4	69.3	0.00000000000389	Transcriptional regulator with XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0035005_38	397291.C804_01124	70.9	0.000000000000149	sequence-specific DNA binding	N/A
PADLOC	UHGV-0035005_38	retron_type_VI_hth_cluster2_1	46.7	0.00000000000075	N/A	Retron
Pfam	UHGV-0035005_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035005_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0035005_40	phrog_2562	126.1	2.9e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035005_40	UniRef90_A0A7C6KYI7	98.2	1.75e-21	N/A	N/A
eggNOG-mapper	UHGV-0035005_40	1035196.HMPREF9998_01752	92.4	7.97e-19	N/A	N/A
Pfam	UHGV-0035005_40	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0035005_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0035005_40	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_41	K02315	115.9	3.9e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0035005_41	phrog_50	114.1	1.2e-33	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035005_41	UniRef90_UPI001AA0C12C	235.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0035005_41	445972.ANACOL_01829	199.0	0	N/A	N/A
Pfam	UHGV-0035005_41	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0035005_41	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0035005_41	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0035005_43	K01160	62.8	9.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035005_43	phrog_34	55.4	0.0000000000000012	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035005_43	UniRef90_A0A2T0APF7	145.0	1.77965e-42	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0035005_43	525919.Apre_0813	111.0	5.76e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0035005_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035005_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035005_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_47	phrog_14105	173.7	0	N/A	unknown function
UniRef90	UHGV-0035005_47	UniRef90_UPI00093B2752	113.0	4.13e-25	PPE family protein	N/A
eggNOG-mapper	UHGV-0035005_47	526218.Sterm_0811	64.3	0.00000000664	dextransucrase activity	N/A
Pfam	UHGV-0035005_47	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0035005_47	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0035005_48	phrog_8684	103.5	1.4e-30	N/A	unknown function
UniRef90	UHGV-0035005_48	UniRef90_A0A349YR03	98.6	1.79e-23	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0035005_48	1121097.JCM15093_2710	82.0	6.92e-18	YopX protein	N/A
Pfam	UHGV-0035005_48	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0035005_48	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0035005_48	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035005_52	PF09871,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_53	phrog_2245	93.9	1.3e-27	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0035005_53	1499683.CCFF01000005_gene41	75.1	0.00000000000000417	N/A	N/A
PHROG	UHGV-0035005_55	phrog_36	51.3	0.000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035005_55	UniRef90_UPI00189CA0E1	80.9	2.95e-17	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0035005_55	1235835.C814_01174	69.3	0.000000000000155	N/A	N/A
structural_annotation	UHGV-0035005_55	PF04545	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035005_56	1408437.JNJN01000060_gene452	484.0	0	heme binding	N/A
Pfam	UHGV-0035005_56	PF01624	N/A	N/A	MutS domain I	MutS_I
Pfam	UHGV-0035005_56	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0035005_56	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0035005_59	K20742	168.1	0	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	N/A
PHROG	UHGV-0035005_59	phrog_12508	135.5	4.2e-40	N/A	unknown function
UniRef90	UHGV-0035005_59	UniRef90_A0A7X6VJF0	304.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0035005_59	1487921.DP68_05500	158.0	1.58001e-40	NLP P60 protein	N/A
Pfam	UHGV-0035005_59	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
Pfam	UHGV-0035005_59	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0035005_59	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
KOfam	UHGV-0035005_60	K01447	110.7	1.8e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0035005_60	phrog_670	150.2	1.54143e-44	endolysin	lysis
UniRef90	UHGV-0035005_60	UniRef90_UPI0015A79365	274.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0035005_60	1499689.CCNN01000007_gene1846	195.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0035005_60	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0035005_60	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0035005_60	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0035005_60	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0035005_61	phrog_263	89.1	2.5e-26	holin	lysis
UniRef90	UHGV-0035005_61	UniRef90_UPI001F05AFD4	95.9	4.57e-24	phage holin	N/A
eggNOG-mapper	UHGV-0035005_61	1121344.JHZO01000004_gene1372	91.3	5e-23	SPP1 phage holin	N/A
Pfam	UHGV-0035005_61	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0035005_61	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0035005_61	PF04688,TIGR01592	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035005_62	1226322.HMPREF1545_04027	48.1	0.000000672	N/A	N/A