UHGV-0038062 (vOTU-035734)

Viral Genome: UHGV-0038062

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0038062
vOTU ID	vOTU-035734
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_22_1305__NODE_2428_length_33114_cov_5.425614
Associated Biosample	SAMEA4765756
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	82.52 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	19
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.979
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	42.35
Jumbo Phage?	No

Genome Content
Length (bps)	33,114
GC Content	40.51%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	57
CDS Density	91%
Average CDS Length (bps)	530.37
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0038062_1	UniRef90_UPI00130E6CB1	70.1	0.0000000000000106	chemotaxis protein	N/A
eggNOG-mapper	UHGV-0038062_1	610130.Closa_1388	92.0	3.16e-24	N/A	N/A
structural_annotation	UHGV-0038062_1	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038062_2	UniRef90_UPI0015D6FA9D	118.0	3.92e-33	N/A	N/A
eggNOG-mapper	UHGV-0038062_2	478749.BRYFOR_06187	129.0	3.63e-38	N/A	N/A
Pfam	UHGV-0038062_2	PF10387	N/A	N/A	N/A	DUF2442
structural_annotation	UHGV-0038062_2	PF10387	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_3	phrog_14333	94.7	7e-28	N/A	unknown function
UniRef90	UHGV-0038062_3	UniRef90_A0A6L9H301	151.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038062_3	626939.HMPREF9443_01279	145.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0038062_3	PF13711	N/A	N/A	N/A	DUF4160
KOfam	UHGV-0038062_4	K07273	194.2	0	acm; lysozyme	N/A
PHROG	UHGV-0038062_4	phrog_291	165.3	0	endolysin	lysis
UniRef90	UHGV-0038062_4	UniRef90_A0A1C6DUD7	286.0	0	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0038062_4	1121115.AXVN01000006_gene2170	162.0	1.31722e-43	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0038062_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0038062_4	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0038062_4	PF01183,MF_00152,NF008522,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_5	phrog_443	65.8	1e-18	holin	lysis
UniRef90	UHGV-0038062_5	UniRef90_UPI001C0212A6	117.0	7.73e-33	holin	N/A
eggNOG-mapper	UHGV-0038062_5	411490.ANACAC_00704	82.8	3.99e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0038062_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0038062_5	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038062_6	UniRef90_A0A3A8UAU8	80.5	4.31e-18	Hemolysin XhlA	N/A
eggNOG-mapper	UHGV-0038062_6	1230342.CTM_14513	51.2	0.000000172	Haemolysin XhlA	N/A
PHROG	UHGV-0038062_7	phrog_1220	158.4	0	head protein	head and packaging
eggNOG-mapper	UHGV-0038062_7	1033738.CAEP01000018_gene3685	112.0	6.01e-26	N/A	N/A
PHROG	UHGV-0038062_8	phrog_538	158.0	0	minor tail protein	tail
UniRef90	UHGV-0038062_8	UniRef90_A0A8J6IQQ3	322.0	0	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0038062_8	1497679.EP56_02980	91.7	8.89e-18	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0038062_8	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0038062_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_9	phrog_33	74.6	2.1e-21	distal tail protein Dit	tail
UniRef90	UHGV-0038062_9	UniRef90_A0A416INB6	223.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0038062_9	1460635.JCM19038_3477	72.0	0.0000000000094	Phage tail protein	N/A
COG	UHGV-0038062_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0038062_9	PF16774,PF21766,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_10	phrog_6900	215.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0038062_10	536233.CLO_1577	236.0	0	tape measure	N/A
COG	UHGV-0038062_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0038062_10	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_11	phrog_706	104.7	1.8e-32	N/A	unknown function
UniRef90	UHGV-0038062_11	UniRef90_A0A1C5VU91	231.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0038062_11	1539298.JO41_08145	114.0	1.99e-29	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0038062_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0038062_11	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_13	phrog_3099	77.3	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0038062_13	1539298.JO41_08150	89.4	3.73e-20	N/A	N/A
structural_annotation	UHGV-0038062_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_14	phrog_3266	74.3	1.5e-21	tail completion	connector
eggNOG-mapper	UHGV-0038062_14	545697.HMPREF0216_02854	50.4	0.00000673	N/A	N/A
structural_annotation	UHGV-0038062_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_15	phrog_556	96.3	2.2e-28	minor head protein	head and packaging
UniRef90	UHGV-0038062_15	UniRef90_UPI001A9B9821	116.0	2.1e-31	capsid protein	N/A
eggNOG-mapper	UHGV-0038062_15	525255.HMPREF0077_0381	112.0	2.08e-30	Minor capsid protein	N/A
structural_annotation	UHGV-0038062_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_16	phrog_3366	43.1	0.00000000000092	N/A	unknown function
structural_annotation	UHGV-0038062_16	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_17	phrog_541	51.3	0.000000000000017	head-tail adaptor	connector
PHROG	UHGV-0038062_19	phrog_422	212.4	0	major head protein	head and packaging
UniRef90	UHGV-0038062_19	UniRef90_W0U896	281.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0038062_19	1235794.C811_01371	318.0	0	N/A	N/A
structural_annotation	UHGV-0038062_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_20	phrog_194	86.8	3.1e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0038062_20	UniRef90_A0A174GWW4	205.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0038062_20	742765.HMPREF9457_02126	134.0	4.44e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0038062_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0038062_20	PF06810	N/A	N/A	N/A	N/A
Pfam	UHGV-0038062_21	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0038062_22	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_24	phrog_581	265.8	0	minor head protein	head and packaging
UniRef90	UHGV-0038062_24	UniRef90_UPI00164C8416	633.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_24	1292035.H476_1017	207.0	0	N/A	N/A
Pfam	UHGV-0038062_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0038062_24	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-0038062_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_24	PF06152,PF03496,MF_04139,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_25	phrog_533	212.5	0	portal protein	head and packaging
UniRef90	UHGV-0038062_25	UniRef90_UPI00164B7587	793.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0038062_25	479437.Elen_2623	147.0	3.28e-36	phage minor capsid protein	N/A
structural_annotation	UHGV-0038062_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0038062_26	K06909	76.0	3.9e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038062_26	phrog_2	90.0	4.3e-26	terminase large subunit	head and packaging
UniRef90	UHGV-0038062_26	UniRef90_A0A6L5YLT0	808.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_26	1235790.C805_00040	520.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0038062_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0038062_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038062_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_27	phrog_1889	44.8	0.0000000000021	terminase small subunit	head and packaging
UniRef90	UHGV-0038062_27	UniRef90_UPI001C02085D	326.0	0	phage terminase small subunit-related protein	N/A
eggNOG-mapper	UHGV-0038062_27	1449050.JNLE01000003_gene3896	76.6	0.000000000000102	DNA packaging	N/A
Pfam	UHGV-0038062_27	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
COG	UHGV-0038062_27	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_27	PF06056,NF040601	N/A	N/A	N/A	N/A
KOfam	UHGV-0038062_29	K04763	184.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0038062_29	phrog_1	163.3	0	integrase	integration and excision
UniRef90	UHGV-0038062_29	UniRef90_A0A6N7W7P5	352.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0038062_29	1514668.JOOA01000001_gene378	208.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0038062_29	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0038062_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0038062_29	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0038062_29	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_30	PF06004,NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_34	PF18358	N/A	N/A	N/A	N/A
KOfam	UHGV-0038062_36	K00390	40.2	5.8e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0038062_36	phrog_424	87.1	1.1e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0038062_36	UniRef90_A0A316M8X6	712.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_36	1235800.C819_02256	624.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0038062_36	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0038062_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0038062_36	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_38	phrog_874	168.2	0	N/A	unknown function
UniRef90	UHGV-0038062_38	UniRef90_A0A6N7W7Q7	199.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_38	411468.CLOSCI_00298	201.0	0	N/A	N/A
structural_annotation	UHGV-0038062_38	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_39	phrog_2118	104.5	1.2e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038062_39	UniRef90_A0A352SFW0	253.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0038062_39	1235799.C818_02668	173.0	0	endonuclease activity	N/A
Pfam	UHGV-0038062_39	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0038062_39	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0038062_39	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_40	phrog_20593	45.3	0.00000000000071	N/A	unknown function
PHROG	UHGV-0038062_41	phrog_599	42.3	0.000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0038062_41	UniRef90_UPI001186151F	130.0	4.43e-38	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0038062_41	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
UniRef90	UHGV-0038062_42	UniRef90_R7BIL7	108.0	1.89e-28	Putative DNA topoisomerase I	N/A
PHROG	UHGV-0038062_43	phrog_8684	98.6	5.1e-29	N/A	unknown function
UniRef90	UHGV-0038062_43	UniRef90_A0A395X9H4	176.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_43	457412.RSAG_01162	167.0	0	YopX protein	N/A
Pfam	UHGV-0038062_43	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0038062_43	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0038062_43	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_44	phrog_15198	50.9	0.000000000000015	N/A	unknown function
UniRef90	UHGV-0038062_44	UniRef90_C7GC26	71.2	0.000000000000901	N/A	N/A
eggNOG-mapper	UHGV-0038062_44	1232453.BAIF02000057_gene1153	60.8	0.00000000218	N/A	N/A
Pfam	UHGV-0038062_44	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0038062_45	UniRef90_A0A415TX35	75.9	0.0000000000000129	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0038062_45	1235790.C805_00035	64.3	0.000000000031	N/A	N/A
eggNOG-mapper	UHGV-0038062_47	397288.C806_00101	50.1	0.000000189	N/A	N/A
PHROG	UHGV-0038062_50	phrog_15768	110.3	5e-33	N/A	unknown function
UniRef90	UHGV-0038062_50	UniRef90_A0A0J9CGG0	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0038062_50	33035.JPJF01000122_gene2459	120.0	1.49e-30	N/A	N/A
AcrCatalog	UHGV-0038062_50	cluster_14472	185.0	0	NA	N/A
Pfam	UHGV-0038062_50	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0038062_50	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0038062_51	K01160	46.7	0.00000000000087	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0038062_51	phrog_1682	77.4	2.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038062_51	UniRef90_A0A412FH46	189.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0038062_51	1235790.C805_00029	174.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0038062_51	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0038062_51	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0038062_51	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_53	phrog_398	211.8	0	N/A	unknown function
UniRef90	UHGV-0038062_53	UniRef90_UPI00068C968F	296.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0038062_53	33035.JPJF01000122_gene2462	296.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0038062_53	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0038062_53	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0038062_54	phrog_14970	247.9	0	N/A	unknown function
UniRef90	UHGV-0038062_54	UniRef90_UPI00123F00F5	202.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0038062_54	1410632.JHWW01000001_gene1266	194.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0038062_54	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0038062_54	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0038062_54	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0038062_55	K03698	50.1	0.000000000000039	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0038062_55	phrog_5889	99.0	3.1e-29	N/A	unknown function
UniRef90	UHGV-0038062_55	UniRef90_A0A7X4ZAN0	313.0	0	HD family phosphohydrolase	N/A
eggNOG-mapper	UHGV-0038062_55	742740.HMPREF9474_02372	221.0	0	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
Pfam	UHGV-0038062_55	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0038062_55	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0038062_55	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038062_57	PF21596,TIGR03081	N/A	N/A	N/A	N/A