UHGV-0039016 (vOTU-097738)

Viral Genome: UHGV-0039016

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0039016
vOTU ID	vOTU-097738
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_6_2233__NODE_2601_length_36539_cov_10.007570
Associated Biosample	SAMEA4766198
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	87.51 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9796
Viral Hallmark Genes (geNomad)	7
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	65.83
Jumbo Phage?	No

Genome Content
Length (bps)	36,539
GC Content	59.92%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	45
CDS Density	92%
Average CDS Length (bps)	747.20
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039016_1	phrog_263	78.8	4e-23	holin	lysis
UniRef90	UHGV-0039016_1	UniRef90_E2ZIC2	149.0	4.2039e-45	Holin, SPP1 family	N/A
eggNOG-mapper	UHGV-0039016_1	748224.HMPREF9436_01413	149.0	0	SPP1 phage holin	N/A
Pfam	UHGV-0039016_1	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0039016_1	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0039016_1	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_2	phrog_9428	152.6	0	N/A	unknown function
UniRef90	UHGV-0039016_2	UniRef90_A0A3E2TBT5	127.0	4.98e-36	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0039016_2	1519439.JPJG01000059_gene1948	135.0	1.11e-39	N/A	N/A
KOfam	UHGV-0039016_3	K08640	103.3	3.3e-30	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0039016_3	phrog_894	111.1	1.1e-32	endolysin	lysis
UniRef90	UHGV-0039016_3	UniRef90_A0A3C0D0L9	250.0	0	Peptidase M15	N/A
eggNOG-mapper	UHGV-0039016_3	748224.HMPREF9436_03320	207.0	0	Peptidase M15	N/A
Pfam	UHGV-0039016_3	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0039016_3	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_3	PF05951,COG3108	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_4	K10804	46.2	0.00000000000065	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0039016_4	phrog_5240	133.4	1.7e-39	tail fiber protein	tail
UniRef90	UHGV-0039016_4	UniRef90_A0A3E2TYR6	393.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0039016_4	411463.EUBVEN_01828	76.3	0.000000000000374	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-0039016_4	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0039016_4	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0039016_4	PF16255,NF007819,COG2755	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_5	K20846	62.9	2.4e-33	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0039016_5	phrog_9534	171.0	0	head protein	head and packaging
eggNOG-mapper	UHGV-0039016_5	657322.FPR_13550	383.0	0	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0039016_5	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0039016_5	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_6	phrog_538	192.5	0	minor tail protein	tail
UniRef90	UHGV-0039016_6	UniRef90_A0A4U7JBL2	121.0	3.52e-28	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0039016_6	748224.HMPREF9436_03324	437.0	0	N/A	N/A
Pfam	UHGV-0039016_6	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0039016_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_7	phrog_36410	41.3	0.000000000019	N/A	unknown function
UniRef90	UHGV-0039016_7	UniRef90_UPI00130E98E0	269.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0039016_7	748224.HMPREF9436_03325	285.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0039016_7	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_8	phrog_28775	466.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0039016_8	UniRef90_A0A316RYK9	874.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0039016_8	478749.BRYFOR_07547	309.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0039016_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0039016_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0039016_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0039016_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_9	phrog_706	113.9	1.2e-33	N/A	unknown function
UniRef90	UHGV-0039016_9	UniRef90_E2ZNP9	192.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0039016_9	748224.HMPREF9436_03328	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039016_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039016_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_10	phrog_4450	97.7	1.1e-28	N/A	unknown function
Pfam	UHGV-0039016_10	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0039016_10	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_11	phrog_820	91.7	6.3e-27	major tail protein	tail
UniRef90	UHGV-0039016_11	UniRef90_A0A174M1L1	118.0	1.37e-29	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039016_11	718252.FP2_06610	235.0	0	N/A	N/A
structural_annotation	UHGV-0039016_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_12	phrog_3266	116.4	1.3e-34	tail completion	connector
UniRef90	UHGV-0039016_12	UniRef90_UPI0010640775	93.6	1.73e-21	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0039016_12	632245.CLP_1653	89.7	8.28e-21	N/A	N/A
structural_annotation	UHGV-0039016_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_13	phrog_556	78.6	6.3e-23	minor head protein	head and packaging
UniRef90	UHGV-0039016_13	UniRef90_UPI001D074B8B	73.6	0.0000000000000363	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039016_13	665956.HMPREF1032_02947	87.4	3.18e-20	Minor capsid protein	N/A
structural_annotation	UHGV-0039016_13	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_14	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_15	phrog_541	44.7	0.0000000000022	head-tail adaptor	connector
PHROG	UHGV-0039016_16	phrog_247	213.5	0	major head protein	head and packaging
UniRef90	UHGV-0039016_16	UniRef90_UPI001BA5448B	200.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0039016_16	33035.JPJF01000106_gene3132	265.0	0	N/A	N/A
structural_annotation	UHGV-0039016_16	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_17	phrog_194	68.2	1.4e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0039016_17	UniRef90_A0A8J6IQD2	80.9	0.00000000000000166	Phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0039016_17	1449050.JNLE01000003_gene3890	73.2	0.000000000000161	Phage minor structural protein GP20	N/A
Pfam	UHGV-0039016_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039016_17	PF06810,MF_02110	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039016_18	1408437.JNJN01000040_gene204	74.7	1.12e-16	N/A	N/A
structural_annotation	UHGV-0039016_18	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_25	phrog_4709	49.7	0.000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0039016_25	509191.AEDB02000020_gene3264	58.2	0.000000000456	N/A	N/A
AcrCatalog	UHGV-0039016_25	cluster_3300	38.5	0.000000719	NA	N/A
eggNOG-mapper	UHGV-0039016_26	1235835.C814_03388	146.0	1.01e-40	N/A	N/A
PHROG	UHGV-0039016_27	phrog_581	269.3	0	minor head protein	head and packaging
UniRef90	UHGV-0039016_27	UniRef90_R6NCU9	261.0	0	Minor capsid 2 protein	N/A
eggNOG-mapper	UHGV-0039016_27	663278.Ethha_0499	207.0	0	N/A	N/A
Pfam	UHGV-0039016_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039016_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_27	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_29	phrog_533	239.3	0	portal protein	head and packaging
UniRef90	UHGV-0039016_29	UniRef90_A0A3E2XD02	920.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0039016_29	1449050.JNLE01000003_gene3894	253.0	0	N/A	N/A
Pfam	UHGV-0039016_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0039016_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_30	K06909	329.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039016_30	phrog_3717	131.3	6.1e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0039016_30	UniRef90_A0A3E2XCJ2	872.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0039016_30	665956.HMPREF1032_02957	400.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0039016_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0039016_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0039016_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039016_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039016_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_31	K07319	116.8	2.1e-34	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0039016_31	phrog_498	459.2	0	DNA methyltransferase	other
UniRef90	UHGV-0039016_31	UniRef90_A0A3E2XCB9	826.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0039016_31	12402.Q708N6_9CAUD	406.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0039016_31	MTase_II_00015	298.3	0	Type II methyltransferase	RM
Pfam	UHGV-0039016_31	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0039016_31	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0039016_31	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_35	PF03496,MF_04142,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_36	phrog_8680	190.2	0	N/A	unknown function
UniRef90	UHGV-0039016_36	UniRef90_A0A373KTP5	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039016_36	1229517.AMFD01000023_gene1324	165.0	0	N/A	N/A
Pfam	UHGV-0039016_36	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0039016_36	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_37	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_38	K14440	84.4	2.3e-33	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0039016_38	phrog_62	380.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_38	UniRef90_A0A3E2XB72	807.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0039016_38	693746.OBV_43130	518.0	0	snf2 family	N/A
PADLOC	UHGV-0039016_38	ZorD1_00007	83.1	3.4e-24	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0039016_38	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0039016_38	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0039016_38	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0039016_38	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_39	phrog_93	57.8	1.7e-16	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_39	UniRef90_UPI001A9B532E	172.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0039016_39	411473.RUMCAL_00894	83.6	1.45e-19	VRR_NUC	N/A
structural_annotation	UHGV-0039016_39	PF01870,COG1637	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_40	phrog_256	918.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_40	UniRef90_A0A3E2XCJ5	1478.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0039016_40	1117108.PAALTS15_09960	722.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0039016_40	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0039016_40	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0039016_40	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039016_41	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0039016_42	K02334	741.6	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0039016_42	phrog_17	355.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_42	UniRef90_A0A3E2XCZ3	1106.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0039016_42	1203606.HMPREF1526_00239	634.0	0	DNA polymerase	N/A
Pfam	UHGV-0039016_42	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0039016_42	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0039016_42	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0039016_43	phrog_112	186.9	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_43	UniRef90_A0A3E2XCH4	320.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039016_43	397288.C806_00737	171.0	0	N/A	N/A
Pfam	UHGV-0039016_43	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0039016_43	PF10991,MF_04153	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039016_44	UniRef90_A0A367G4F2	80.9	9.5e-19	DNA-binding protein	N/A
PHROG	UHGV-0039016_45	phrog_69	235.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039016_45	UniRef90_A0A3E2XB65	529.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039016_45	1408437.JNJN01000081_gene1518	279.0	0	N/A	N/A
Pfam	UHGV-0039016_45	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0039016_45	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0039016_45	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A