UHGV-0040060 (vOTU-044798)

Viral Genome: UHGV-0040060

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0040060
vOTU ID	vOTU-044798
Representative Genome?	Yes
Source	Hadza
Original Genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_F_7_RAU0027AZ__NODE_2374_length_41654_cov_29.702672
Associated Biosample	SAMEA11460267
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9816
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	30.49
Jumbo Phage?	No

Genome Content
Length (bps)	41,598
GC Content	58.07%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	94%
Average CDS Length (bps)	651.00
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0040060_1	1519439.JPJG01000060_gene1903	65.9	0.0000000000413	N/A	N/A
KOfam	UHGV-0040060_2	K06909	152.8	2.8026e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0040060_2	phrog_979	140.6	5.70328e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0040060_2	UniRef90_A0A810Q5R0	652.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0040060_2	1410650.JHWL01000003_gene2834	617.0	0	N/A	N/A
Pfam	UHGV-0040060_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0040060_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0040060_2	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_3	phrog_606	67.3	2e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0040060_3	UniRef90_UPI001F487344	127.0	3.68e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0040060_3	397290.C810_05185	127.0	1.51e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0040060_3	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0040060_5	phrog_3584	113.1	2.4e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040060_5	537013.CLOSTMETH_02141	67.0	0.0000000000823	N/A	N/A
structural_annotation	UHGV-0040060_5	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_6	phrog_2245	86.6	2.6e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0040060_6	UniRef90_A0A844JSD9	68.9	0.00000000000291	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0040060_6	428125.CLOLEP_01814	66.2	0.0000000000149	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0040060_6	PF08271	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040060_8	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_10	phrog_190	100.6	1.5e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040060_10	UniRef90_UPI0006C2AC63	130.0	8.06e-36	N/A	N/A
eggNOG-mapper	UHGV-0040060_10	693746.OBV_25250	115.0	1.13e-30	N/A	N/A
Pfam	UHGV-0040060_10	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0040060_10	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_14	phrog_38832	88.5	1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0040060_14	665956.HMPREF1032_00143	89.7	2.73e-20	N/A	N/A
PHROG	UHGV-0040060_15	phrog_38832	78.4	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0040060_15	665956.HMPREF1032_00143	75.5	0.0000000000000102	N/A	N/A
structural_annotation	UHGV-0040060_15	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_16	phrog_4019	72.6	4.2e-21	N/A	unknown function
UniRef90	UHGV-0040060_16	UniRef90_A0A1I9KKB4	62.8	0.000000000221	Deoxyribonuclease NucA/NucB	N/A
PHROG	UHGV-0040060_18	phrog_757	232.7	0	DNA methyltransferase	other
UniRef90	UHGV-0040060_18	UniRef90_A0A6M3LEH2	221.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0040060_18	1235790.C805_00032	227.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0040060_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0040060_18	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_20	phrog_111	168.1	0	DNA methyltransferase	other
UniRef90	UHGV-0040060_20	UniRef90_A0A1Y4EVK6	230.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0040060_20	760568.Desku_0784	203.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0040060_20	oMTase_00015	196.8	0	orphan methyltransferase	RM
Pfam	UHGV-0040060_20	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0040060_20	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040060_23	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040060_24	NF041247	N/A	N/A	N/A	N/A
KOfam	UHGV-0040060_27	K18830	58.8	1.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0040060_27	phrog_8	48.0	0.00000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040060_27	UniRef90_A0A350VVA2	95.9	3.82e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0040060_27	1280698.AUJS01000007_gene1002	68.6	0.000000000000775	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0040060_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040060_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0040060_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_29	phrog_5783	280.7	0	N/A	unknown function
UniRef90	UHGV-0040060_29	UniRef90_A0A1C7FL48	337.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0040060_29	445971.ANASTE_00686	261.0	0	NYN domain	N/A
Pfam	UHGV-0040060_29	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0040060_29	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0040060_29	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
Pfam	UHGV-0040060_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040060_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0040060_31	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0040060_32	K06400	253.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0040060_32	phrog_95	266.7	0	integrase	integration and excision
UniRef90	UHGV-0040060_32	UniRef90_A0A3A9FR25	409.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0040060_32	1408437.JNJN01000002_gene1420	402.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0040060_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0040060_32	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0040060_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0040060_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0040060_32	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040060_33	UniRef90_A0A7M1RTM1	81.6	2.8e-16	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0040060_33	1378168.N510_03079	70.5	0.00000000000206	N/A	N/A
eggNOG-mapper	UHGV-0040060_37	1280664.AUIX01000040_gene2326	61.6	0.00000000193	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0040060_37	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
UniRef90	UHGV-0040060_38	UniRef90_A0A1Y3R5J8	48.9	0.00000285	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040060_38	1160721.RBI_I00206	50.8	0.0000000868	N/A	N/A
structural_annotation	UHGV-0040060_38	PF10723	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040060_41	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-0040060_41	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040060_42	UniRef90_UPI00164EA432	221.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040060_42	525254.HMPREF0072_1273	221.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0040060_42	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0040060_42	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_43	phrog_6918	93.9	1.1e-27	holin	lysis
UniRef90	UHGV-0040060_43	UniRef90_A0A316QCY7	102.0	4.93e-26	Holin	N/A
eggNOG-mapper	UHGV-0040060_43	1297617.JPJD01000020_gene301	100.0	3.45e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0040060_43	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0040060_43	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_45	phrog_937	50.2	0.00000000000005	hemolysin	other
eggNOG-mapper	UHGV-0040060_47	1519439.JPJG01000060_gene1895	83.2	7.92e-18	N/A	N/A
structural_annotation	UHGV-0040060_47	PF10618	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040060_48	UniRef90_UPI00051B4A1C	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040060_48	1519439.JPJG01000060_gene1894	191.0	0	N/A	N/A
Pfam	UHGV-0040060_48	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0040060_48	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0040060_48	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0040060_49	K16628	135.7	1.10001e-40	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0040060_49	phrog_819	110.1	4.99983e-42	tail protein	tail
eggNOG-mapper	UHGV-0040060_49	1519439.JPJG01000060_gene1892	84.0	0.000000000000044	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0040060_49	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0040060_49	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0040060_50	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_51	phrog_22978	125.7	4.49957e-42	N/A	unknown function
eggNOG-mapper	UHGV-0040060_51	1408437.JNJN01000039_gene389	477.0	0	heme binding	N/A
Pfam	UHGV-0040060_51	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0040060_51	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-0040060_52	UniRef90_R5DCX9	170.0	1.4013e-45	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040060_52	1410650.JHWL01000003_gene2815	124.0	8.46e-29	N/A	N/A
PHROG	UHGV-0040060_53	phrog_12105	123.1	1.5e-36	N/A	unknown function
eggNOG-mapper	UHGV-0040060_53	1226322.HMPREF1545_03850	61.2	0.000000000286	N/A	N/A
PHROG	UHGV-0040060_55	phrog_1357	213.5	0	major head protein	head and packaging
UniRef90	UHGV-0040060_55	UniRef90_A0A2V2CFL5	395.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0040060_55	1410650.JHWL01000003_gene2830	283.0	0	N/A	N/A
Pfam	UHGV-0040060_55	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0040060_55	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0040060_55	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_56	phrog_13908	152.1	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-0040060_56	1410650.JHWL01000003_gene2831	109.0	3.57e-25	N/A	N/A
PHROG	UHGV-0040060_57	phrog_156	304.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0040060_57	1410650.JHWL01000003_gene2833	547.0	0	N/A	N/A
structural_annotation	UHGV-0040060_57	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_59	phrog_7121	107.6	6.6e-32	tail fiber protein	tail
UniRef90	UHGV-0040060_59	UniRef90_R5ILW4	772.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040060_59	1226322.HMPREF1545_00783	94.4	7.9e-18	Chaperone of endosialidase	N/A
Pfam	UHGV-0040060_59	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0040060_59	PF10248	N/A	N/A	N/A	N/A
PHROG	UHGV-0040060_60	phrog_511	223.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0040060_60	1321782.HMPREF1986_00351	251.0	0	N/A	N/A