UHGV-0043365 (vOTU-084874)

Viral Genome: UHGV-0043365

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0043365
vOTU ID	vOTU-084874
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_1070
Associated Biosample	SAMD00036372
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	96.19 (High-quality)
Trimmed?	No
CheckV Viral Markers	24
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9749
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	57.13
Jumbo Phage?	No

Genome Content
Length (bps)	40,338
GC Content	62.02%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	90%
Average CDS Length (bps)	651.59
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0043365_1	K14059	182.8	0	int; integrase	N/A
PHROG	UHGV-0043365_1	phrog_1	167.5	0	integrase	integration and excision
UniRef90	UHGV-0043365_1	UniRef90_A0A367GI93	211.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0043365_1	1507.HMPREF0262_00307	171.0	0	Phage integrase family	N/A
Pfam	UHGV-0043365_1	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0043365_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0043365_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0043365_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_2	K01356	148.0	9.80909e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0043365_2	phrog_4	108.2	1.1e-31	transcriptional repressor	transcription regulation
UniRef90	UHGV-0043365_2	UniRef90_UPI001D0E173A	276.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0043365_2	411473.RUMCAL_03095	167.0	0	N/A	N/A
Pfam	UHGV-0043365_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0043365_2	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0043365_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0043365_2	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043365_3	UniRef90_E4L8D1	59.3	0.00000000048	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0043365_3	910314.HMPREF9220_1114	59.3	0.0000000000806	N/A	N/A
Pfam	UHGV-0043365_3	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0043365_3	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0043365_3	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_5	phrog_37789	131.5	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0043365_8	760568.Desku_0919	93.2	1.01e-20	N/A	N/A
structural_annotation	UHGV-0043365_8	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_10	phrog_69	302.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_10	UniRef90_A0A3E2XB65	616.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043365_10	1408437.JNJN01000081_gene1518	317.0	0	N/A	N/A
Pfam	UHGV-0043365_10	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0043365_10	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0043365_10	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_11	phrog_112	184.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_11	UniRef90_A0A3E2XCH4	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043365_11	180332.JTGN01000004_gene2303	181.0	0	N/A	N/A
Pfam	UHGV-0043365_11	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0043365_11	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_12	K02334	753.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0043365_12	phrog_17	358.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_12	UniRef90_A0A3E2XCZ3	1311.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0043365_12	693746.OBV_43170	653.0	0	DNA polymerase	N/A
Pfam	UHGV-0043365_12	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0043365_12	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0043365_12	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_13	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_14	phrog_256	933.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_14	UniRef90_A0A3E2XCJ5	1490.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0043365_14	1120971.AUCA01000043_gene1172	716.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0043365_14	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0043365_14	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0043365_14	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_15	phrog_93	53.5	0.0000000000000032	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_15	UniRef90_UPI001A9B532E	176.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0043365_15	1117108.PAALTS15_13622	80.1	4.74e-18	VRR_NUC	N/A
KOfam	UHGV-0043365_16	K14440	110.3	9.8e-33	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0043365_16	phrog_62	365.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0043365_16	UniRef90_A0A3E2XB72	795.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0043365_16	693746.OBV_43130	503.0	0	snf2 family	N/A
PADLOC	UHGV-0043365_16	ZorD1_00007	97.4	1.9e-28	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0043365_16	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-0043365_16	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0043365_16	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_17	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_18	phrog_8680	177.2	0	N/A	unknown function
UniRef90	UHGV-0043365_18	UniRef90_A0A373KTP5	160.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0043365_18	1229517.AMFD01000023_gene1324	155.0	8.40779e-45	N/A	N/A
Pfam	UHGV-0043365_18	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0043365_18	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_19	PF03496,MF_04142,NF040688	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_23	K07319	126.5	2.8e-37	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0043365_23	phrog_498	465.2	0	DNA methyltransferase	other
UniRef90	UHGV-0043365_23	UniRef90_A0A3E2XCB9	813.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0043365_23	12402.Q708N6_9CAUD	405.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0043365_23	MTase_II_00015	306.3	0	Type II methyltransferase	RM
Pfam	UHGV-0043365_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0043365_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0043365_23	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_24	K06909	322.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0043365_24	phrog_3717	126.2	2.5e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0043365_24	UniRef90_A0A3E2XCJ2	840.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0043365_24	665956.HMPREF1032_02957	405.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0043365_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0043365_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0043365_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0043365_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0043365_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_25	phrog_533	241.0	0	portal protein	head and packaging
UniRef90	UHGV-0043365_25	UniRef90_A0A3E2XD02	843.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0043365_25	1449050.JNLE01000003_gene3894	283.0	0	N/A	N/A
Pfam	UHGV-0043365_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0043365_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_27	phrog_581	263.5	0	minor head protein	head and packaging
UniRef90	UHGV-0043365_27	UniRef90_R6NCU9	258.0	0	Minor capsid 2 protein	N/A
eggNOG-mapper	UHGV-0043365_27	641112.ACOK01000073_gene2890	189.0	0	N/A	N/A
Pfam	UHGV-0043365_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0043365_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_27	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043365_28	1235835.C814_03388	105.0	7.2e-25	N/A	N/A
eggNOG-mapper	UHGV-0043365_29	457415.HMPREF1006_00461	49.3	0.000000596	N/A	N/A
eggNOG-mapper	UHGV-0043365_35	1408437.JNJN01000040_gene204	74.7	1.08e-16	N/A	N/A
structural_annotation	UHGV-0043365_35	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_36	phrog_194	61.7	1.6e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0043365_36	UniRef90_A0A8J6IQD2	71.2	0.00000000000642	Phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0043365_36	1449050.JNLE01000003_gene3890	71.6	0.000000000000562	Phage minor structural protein GP20	N/A
Pfam	UHGV-0043365_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0043365_36	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_37	phrog_247	212.3	0	major head protein	head and packaging
UniRef90	UHGV-0043365_37	UniRef90_UPI0011090220	129.0	3.83e-31	major capsid protein	N/A
eggNOG-mapper	UHGV-0043365_37	33035.JPJF01000106_gene3132	265.0	0	N/A	N/A
structural_annotation	UHGV-0043365_37	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_39	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_40	phrog_556	81.8	6.8e-24	minor head protein	head and packaging
UniRef90	UHGV-0043365_40	UniRef90_UPI00102FEF69	67.0	0.000000000006	minor capsid protein	N/A
eggNOG-mapper	UHGV-0043365_40	525255.HMPREF0077_0381	66.6	0.00000000000142	Minor capsid protein	N/A
structural_annotation	UHGV-0043365_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_41	phrog_3266	124.7	4.4e-37	tail completion	connector
UniRef90	UHGV-0043365_41	UniRef90_UPI001178914F	108.0	2.35e-27	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0043365_41	718252.FP2_06620	112.0	7.39e-30	N/A	N/A
structural_annotation	UHGV-0043365_41	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_42	phrog_820	88.3	7.4e-26	major tail protein	tail
UniRef90	UHGV-0043365_42	UniRef90_A0A174M1L1	105.0	1.04e-24	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0043365_42	748224.HMPREF9436_03330	217.0	0	N/A	N/A
structural_annotation	UHGV-0043365_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_43	phrog_4450	93.5	1.9e-27	N/A	unknown function
structural_annotation	UHGV-0043365_43	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_44	phrog_706	127.1	1.2e-37	N/A	unknown function
UniRef90	UHGV-0043365_44	UniRef90_E2ZNP9	186.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0043365_44	748224.HMPREF9436_03328	186.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0043365_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0043365_45	phrog_28775	604.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0043365_45	UniRef90_A0A316RYK9	697.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0043365_45	478749.BRYFOR_07547	325.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0043365_45	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0043365_45	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0043365_45	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0043365_45	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_46	phrog_36410	68.5	8.2e-20	N/A	unknown function
UniRef90	UHGV-0043365_46	UniRef90_UPI00130E98E0	537.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0043365_46	748224.HMPREF9436_03325	291.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0043365_46	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_47	phrog_538	179.7	0	minor tail protein	tail
UniRef90	UHGV-0043365_47	UniRef90_UPI0011064D4D	93.6	7.47e-18	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0043365_47	748224.HMPREF9436_03324	449.0	0	N/A	N/A
Pfam	UHGV-0043365_47	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0043365_47	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_48	phrog_9534	245.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-0043365_48	748224.HMPREF9436_03323	202.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0043365_48	PF21567	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_51	K19158	128.6	3.3e-38	yoeB; toxin YoeB [EC:3.1.-.-]	N/A
PHROG	UHGV-0043365_51	phrog_1213	50.7	0.000000000000038	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0043365_51	UniRef90_A0A564SVN3	186.0	0	Putative mRNA interferase YoeB	N/A
eggNOG-mapper	UHGV-0043365_51	718252.FP2_06510	186.0	0	YoeB-like toxin of bacterial type II toxin-antitoxin system	N/A
Pfam	UHGV-0043365_51	PF06769	N/A	N/A	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
NCBIFam	UHGV-0043365_51	TIGR02116.1	N/A	N/A	Txe/YoeB family addiction module toxin	N/A
COG	UHGV-0043365_51	COG4115	N/A	N/A	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	N/A
structural_annotation	UHGV-0043365_51	PF06769,TIGR02116,COG4115	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_52	K07473	75.2	1.4e-21	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0043365_52	phrog_2737	52.9	0.0000000000000022	N/A	unknown function
UniRef90	UHGV-0043365_52	UniRef90_A0A2A7BEI9	157.0	0	Type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-0043365_52	718252.FP2_06500	170.0	0	Addiction module antitoxin, RelB DinJ family	N/A
Pfam	UHGV-0043365_52	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0043365_52	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0043365_52	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0043365_52	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
KOfam	UHGV-0043365_53	K08640	94.9	1.5e-27	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0043365_53	phrog_894	99.5	4.2e-29	endolysin	lysis
UniRef90	UHGV-0043365_53	UniRef90_A0A3E2U540	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043365_53	718252.FP2_05470	253.0	0	Peptidase M15A	N/A
Pfam	UHGV-0043365_53	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0043365_53	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043365_53	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0043365_55	phrog_4105	82.0	5.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0043365_55	657322.FPR_27220	105.0	4.8e-28	N/A	N/A
PHROG	UHGV-0043365_56	phrog_263	75.6	4.3e-22	holin	lysis
UniRef90	UHGV-0043365_56	UniRef90_A0A564SW15	140.0	6.09985e-42	Phage lysis protein, holin	N/A
eggNOG-mapper	UHGV-0043365_56	718252.FP2_06470	130.0	1.3e-38	SPP1 phage holin	N/A
Pfam	UHGV-0043365_56	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0043365_56	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0043365_56	PF04688,TIGR01592	N/A	N/A	N/A	N/A