UHGV-0043881 (vOTU-020990)

Viral Genome: UHGV-0043881

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0043881
vOTU ID	vOTU-020990
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_18102
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	86.37 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9828
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	27.24
Jumbo Phage?	No

Genome Content
Length (bps)	31,839
GC Content	57.41%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	53
CDS Density	96%
Average CDS Length (bps)	574.81
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0043881_1	phrog_1066	129.7	1.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0043881_1	1341151.ASZU01000004_gene265	120.0	1.53e-33	N/A	N/A
structural_annotation	UHGV-0043881_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_2	phrog_9	382.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0043881_2	UniRef90_UPI001D07C789	779.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0043881_2	1203606.HMPREF1526_00981	734.0	0	Terminase	N/A
Pfam	UHGV-0043881_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0043881_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0043881_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0043881_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_3	phrog_12	182.5	0	portal protein	head and packaging
UniRef90	UHGV-0043881_3	UniRef90_UPI001898FCCE	504.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0043881_3	626523.GCWU000342_01027	502.0	0	Portal protein	N/A
Pfam	UHGV-0043881_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0043881_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0043881_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0043881_4	K01358	132.7	4.2e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0043881_4	phrog_94	203.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0043881_4	UniRef90_UPI0018979DC8	209.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0043881_4	1280689.AUJC01000011_gene1520	194.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0043881_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0043881_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0043881_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_5	phrog_10	180.6	0	major head protein	head and packaging
UniRef90	UHGV-0043881_5	UniRef90_UPI00189AE5FE	416.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0043881_5	1280689.AUJC01000011_gene1521	390.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0043881_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0043881_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0043881_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0043881_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_6	phrog_5223	45.7	0.00000000000089	neck protein	connector
UniRef90	UHGV-0043881_6	UniRef90_B6W9Y5	61.6	0.000000000257	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0043881_6	561177.ANHYDRO_01411	61.6	0.0000000000431	N/A	N/A
PHROG	UHGV-0043881_7	phrog_1951	75.8	4e-22	head-tail adaptor	connector
UniRef90	UHGV-0043881_7	UniRef90_UPI001B02B074	64.7	0.0000000000183	phage head closure protein	N/A
eggNOG-mapper	UHGV-0043881_7	1094508.Tsac_2422	55.8	0.0000000101	Phage head-tail joining protein	N/A
Pfam	UHGV-0043881_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0043881_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0043881_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0043881_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043881_8	1487921.DP68_11350	58.9	0.000000000787	N/A	N/A
structural_annotation	UHGV-0043881_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_9	phrog_5	44.9	0.0000000000028	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0043881_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_10	phrog_88	84.7	1.1e-24	major tail protein	tail
UniRef90	UHGV-0043881_10	UniRef90_S0FUN2	114.0	1.33e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0043881_10	1195236.CTER_5106	114.0	2.23e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0043881_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0043881_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_12	phrog_33680	149.2	2.52234e-44	N/A	unknown function
UniRef90	UHGV-0043881_12	UniRef90_UPI00098F054B	224.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0043881_12	509191.AEDB02000020_gene3249	207.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-0043881_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0043881_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_13	phrog_37549	76.3	1.1e-24	virion structural protein	head and packaging
UniRef90	UHGV-0043881_13	UniRef90_A0A3D0W045	228.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0043881_13	1195236.CTER_5103	126.0	1.34e-27	N/A	N/A
structural_annotation	UHGV-0043881_13	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_14	phrog_26795	131.6	4.6e-39	N/A	unknown function
UniRef90	UHGV-0043881_14	UniRef90_A0A5J6T4K8	135.0	8.12e-33	Minor tail protein	N/A
eggNOG-mapper	UHGV-0043881_14	1195236.CTER_5102	136.0	3.45e-34	N/A	N/A
structural_annotation	UHGV-0043881_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_15	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_16	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043881_17	411471.SUBVAR_06929	309.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0043881_17	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0043881_18	phrog_37900	317.2	0	N/A	unknown function
UniRef90	UHGV-0043881_18	UniRef90_UPI001C3EA4DF	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-0043881_18	552398.HMPREF0866_03098	244.0	0	N/A	N/A
Pfam	UHGV-0043881_18	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0043881_18	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0043881_18	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_19	phrog_29409	41.9	0.000000000016	N/A	unknown function
UniRef90	UHGV-0043881_21	UniRef90_A0A521IRB0	55.5	0.000000616	Chitin-binding type-3 domain-containing protein	N/A
structural_annotation	UHGV-0043881_21	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_24	phrog_6918	95.6	3.4e-28	holin	lysis
UniRef90	UHGV-0043881_24	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-0043881_24	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0043881_24	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0043881_24	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043881_25	UniRef90_UPI00164EA432	222.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0043881_25	525254.HMPREF0072_1273	220.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0043881_25	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0043881_25	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_26	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043881_27	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-0043881_27	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043881_31	UniRef90_A0A7M1RTM1	76.3	0.0000000000000319	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0043881_31	1378168.N510_03079	68.2	0.0000000000145	N/A	N/A
KOfam	UHGV-0043881_32	K06400	375.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0043881_32	phrog_95	363.4	0	integrase	integration and excision
UniRef90	UHGV-0043881_32	UniRef90_UPI00189960B8	503.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0043881_32	1235835.C814_00825	408.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0043881_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0043881_32	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0043881_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0043881_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0043881_32	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0043881_33	UniRef90_A0A810PZB1	73.2	0.000000000000273	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0043881_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043881_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0043881_33	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_34	phrog_10292	74.9	6.6e-22	N/A	unknown function
UniRef90	UHGV-0043881_34	UniRef90_A0A416W984	96.7	4.51e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0043881_34	537013.CLOSTMETH_02269	81.6	1.39e-17	TM2 domain	N/A
Pfam	UHGV-0043881_34	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0043881_34	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0043881_34	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0043881_36	K22300	51.3	0.000000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0043881_36	phrog_2967	49.9	0.000000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0043881_36	UniRef90_A0A1Y4L0A2	128.0	9.28e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0043881_36	1235797.C816_03553	97.4	8.64e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0043881_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0043881_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0043881_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0043881_39	642492.Clole_0961	68.9	0.0000000000000152	N/A	N/A
structural_annotation	UHGV-0043881_39	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_40	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_43	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0043881_44	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0043881_47	K00571	122.6	4.2e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0043881_47	phrog_67	100.4	1e-29	DNA methyltransferase	other
UniRef90	UHGV-0043881_47	UniRef90_A0A2U1CFM2	410.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0043881_47	411468.CLOSCI_00299	357.0	0	DNA methylase	N/A
PADLOC	UHGV-0043881_47	MTase_II_00157	92.6	5.6e-27	Type II methyltransferase	RM
Pfam	UHGV-0043881_47	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0043881_47	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0043881_47	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0043881_49	K00558	155.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0043881_49	phrog_363	245.4	0	DNA methyltransferase	other
UniRef90	UHGV-0043881_49	UniRef90_G4KRB8	347.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0043881_49	693746.OBV_01900	347.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0043881_49	MTase_II_00058	121.8	5.7e-36	Type II methyltransferase	RM
Pfam	UHGV-0043881_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0043881_49	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0043881_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0043881_49	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0043881_50	K00390	91.8	8.3e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0043881_50	phrog_424	121.0	9.3e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0043881_50	UniRef90_UPI001D087498	407.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0043881_50	1408437.JNJN01000032_gene2312	318.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0043881_50	BrxP_00001	65.1	5.7e-19	BrxP	BREX
Pfam	UHGV-0043881_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0043881_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0043881_50	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_51	phrog_7704	41.8	0.000000000017	N/A	unknown function
UniRef90	UHGV-0043881_51	UniRef90_UPI000F636DD2	54.7	0.000000869	N/A	N/A
Pfam	UHGV-0043881_51	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0043881_51	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_52	phrog_954	199.3	0	DNA methyltransferase	other
UniRef90	UHGV-0043881_52	UniRef90_A0A810Q0N4	294.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0043881_52	1280698.AUJS01000007_gene1028	271.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0043881_52	MTase_II_00074	196.5	0	Type II methyltransferase	RM
Pfam	UHGV-0043881_52	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0043881_52	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0043881_52	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0043881_53	phrog_3136	114.7	4.6e-34	N/A	unknown function
UniRef90	UHGV-0043881_53	UniRef90_UPI001C26B029	119.0	1.99e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0043881_53	97139.C824_00742	55.1	0.000000265	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0043881_53	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0043881_53	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A