UHGV-0049854 (vOTU-070909)

Viral Genome: UHGV-0049854

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-0049854
vOTU ID	vOTU-070909
Representative Genome?	Yes
Source	GPD
Original Genome ID	uvig_65831
Associated Biosample	SAMEA2338687
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	Yes
CheckV Viral Markers	9
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.969
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	12.69
Jumbo Phage?	No

Genome Content
Length (bps)	47,720
GC Content	42.81%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	67
CDS Density	91%
Average CDS Length (bps)	650.37
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0049854_2	UniRef90_R6FG82	402.0	0	Peptidase M56 family	N/A
eggNOG-mapper	UHGV-0049854_2	1123075.AUDP01000019_gene1632	92.8	9.32e-21	N/A	N/A
KOfam	UHGV-0049854_5	K14059	180.1	0	int; integrase	N/A
PHROG	UHGV-0049854_5	phrog_1	167.6	0	integrase	integration and excision
UniRef90	UHGV-0049854_5	UniRef90_A0A1C5ZND9	320.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0049854_5	1304866.K413DRAFT_1180	310.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0049854_5	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0049854_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0049854_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0049854_5	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049854_6	PF11026	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_7	1009370.ALO_15872	114.0	9.9e-27	N/A	N/A
structural_annotation	UHGV-0049854_7	PF20505,MF_00194,NF001463,COG2974	N/A	N/A	N/A	N/A
KOfam	UHGV-0049854_9	K01356	156.6	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0049854_9	phrog_4	135.0	0	transcriptional repressor	transcription regulation
UniRef90	UHGV-0049854_9	UniRef90_A0A6L5YG95	412.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_9	483218.BACPEC_01181	253.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0049854_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0049854_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0049854_9	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0049854_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0049854_9	PF00717,PF01381,MF_00015,MF_00535,TIGR00498,NF041951,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0049854_10	UniRef90_UPI0015F7B8EC	110.0	1.18e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0049854_10	1321814.HMPREF9089_00909	64.7	0.000000000000446	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0049854_10	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0049854_11	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0049854_15	K03698	49.5	0.000000000000043	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0049854_15	phrog_5889	108.3	5.9e-32	N/A	unknown function
UniRef90	UHGV-0049854_15	UniRef90_A0A3R5ZBU3	233.0	0	HD family phosphohydrolase	N/A
eggNOG-mapper	UHGV-0049854_15	411468.CLOSCI_00316	223.0	0	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
Pfam	UHGV-0049854_15	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0049854_15	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0049854_15	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_16	phrog_14970	279.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0049854_16	697329.Rumal_1121	209.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0049854_16	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0049854_16	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0049854_16	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_17	phrog_72	57.1	3.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0049854_17	411490.ANACAC_00804	139.0	3.72e-39	N/A	N/A
structural_annotation	UHGV-0049854_17	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_18	phrog_15768	93.5	3e-27	N/A	unknown function
UniRef90	UHGV-0049854_18	UniRef90_A0A318KSV9	118.0	6.92e-29	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0049854_18	886379.AEWI01000001_gene1766	143.0	1.82e-39	N/A	N/A
structural_annotation	UHGV-0049854_18	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_20	phrog_19106	275.7	0	N/A	unknown function
UniRef90	UHGV-0049854_20	UniRef90_A0A6L5YG76	384.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0049854_20	658655.HMPREF0988_00875	222.0	0	N/A	N/A
Pfam	UHGV-0049854_20	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0049854_20	TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_24	phrog_38832	43.0	0.0000000000069	N/A	unknown function
UniRef90	UHGV-0049854_24	UniRef90_A0A415TX35	60.8	0.00000000664	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_24	397290.C810_01492	63.5	0.000000000074	N/A	N/A
PHROG	UHGV-0049854_25	phrog_15198	49.7	0.000000000000059	N/A	unknown function
UniRef90	UHGV-0049854_25	UniRef90_A0A352SFV2	255.0	0	N/A	N/A
eggNOG-mapper	UHGV-0049854_25	658655.HMPREF0988_00863	57.4	0.0000000273	N/A	N/A
Pfam	UHGV-0049854_25	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0049854_25	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_27	1304866.K413DRAFT_4602	64.3	0.0000000000063	N/A	N/A
PHROG	UHGV-0049854_28	phrog_8684	89.1	2e-26	N/A	unknown function
UniRef90	UHGV-0049854_28	UniRef90_A0A6L5YH53	153.0	1.4013e-45	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_28	742733.HMPREF9469_00912	81.6	6.14e-18	YopX protein	N/A
Pfam	UHGV-0049854_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0049854_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0049854_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_30	phrog_10714	45.8	0.00000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0049854_30	397290.C810_01514	57.4	0.00000000743	N/A	N/A
PHROG	UHGV-0049854_32	phrog_874	165.3	0	N/A	unknown function
UniRef90	UHGV-0049854_32	UniRef90_UPI0018F57B3A	219.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_32	411468.CLOSCI_00298	179.0	0	N/A	N/A
structural_annotation	UHGV-0049854_32	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_35	phrog_424	93.5	2.7e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0049854_35	UniRef90_A0A3D5WJX6	421.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0049854_35	1410650.JHWL01000037_gene617	245.0	0	sulfate reduction	N/A
COG	UHGV-0049854_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0049854_35	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0049854_37	K00571	90.3	2.1e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0049854_37	phrog_16	220.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0049854_37	UniRef90_A0A173S745	1575.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0049854_37	1298920.KI911353_gene2709	1401.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0049854_37	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0049854_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0049854_37	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0049854_37	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0049854_38	K00558	225.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0049854_38	phrog_116	263.4	0	DNA methyltransferase	other
UniRef90	UHGV-0049854_38	UniRef90_A0A1C5S2H5	916.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0049854_38	1235800.C819_02255	674.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0049854_38	MTase_II_00020	111.1	1.1e-36	Type II methyltransferase	RM
Pfam	UHGV-0049854_38	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0049854_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0049854_38	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_41	1304866.K413DRAFT_1210	73.6	4.02e-16	N/A	N/A
structural_annotation	UHGV-0049854_41	NF041909	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_42	397290.C810_01505	125.0	3.4e-35	N/A	N/A
Pfam	UHGV-0049854_42	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0049854_44	1235793.C809_00537	53.5	0.0000000167	N/A	N/A
PHROG	UHGV-0049854_45	phrog_36	68.3	1.5e-19	transcriptional regulator	transcription regulation
Pfam	UHGV-0049854_45	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0049854_45	PF07374,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_47	1450694.BTS2_3311	59.3	0.000000000822	N/A	N/A
PHROG	UHGV-0049854_48	phrog_15863	156.2	0	N/A	unknown function
UniRef90	UHGV-0049854_48	UniRef90_UPI000555AF35	168.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_48	888064.HMPREF9088_2252	139.0	1.29e-39	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0049854_48	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
Pfam	UHGV-0049854_50	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0049854_50	PF03869,NF040976,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_51	phrog_606	58.8	1.1e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0049854_51	UniRef90_UPI001D088AD3	134.0	9.36e-38	DNA-packaging protein	N/A
Pfam	UHGV-0049854_51	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0049854_51	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0049854_52	K06909	41.4	0.000000000015	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0049854_52	phrog_2	99.5	5.6e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0049854_52	UniRef90_UPI001F401ABC	583.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0049854_52	1232449.BAHV02000016_gene1824	159.0	1.56e-40	N/A	N/A
COG	UHGV-0049854_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0049854_52	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_53	phrog_156	226.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0049854_53	693746.OBV_23930	450.0	0	N/A	N/A
structural_annotation	UHGV-0049854_53	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_55	phrog_35275	79.8	3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0049854_55	1226322.HMPREF1545_03846	75.5	0.000000000000735	N/A	N/A
PHROG	UHGV-0049854_56	phrog_24113	80.0	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0049854_56	1226322.HMPREF1545_03847	62.8	0.000000000116	N/A	N/A
structural_annotation	UHGV-0049854_56	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_57	phrog_371	87.8	1.3e-25	major head protein	head and packaging
UniRef90	UHGV-0049854_57	UniRef90_A0A1Z8VY81	64.3	0.0000000507	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0049854_57	1226322.HMPREF1545_03848	155.0	6.06062e-42	N/A	N/A
Pfam	UHGV-0049854_57	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0049854_57	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_59	phrog_13046	44.3	0.000000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0049854_59	693746.OBV_23880	88.2	7.51e-18	N/A	N/A
structural_annotation	UHGV-0049854_59	PF20387,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_60	phrog_3287	146.3	2.00386e-43	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0049854_60	665956.HMPREF1032_03917	713.0	0	N/A	N/A
structural_annotation	UHGV-0049854_60	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0049854_61	1235793.C809_01950	58.5	0.00000178	Phage tail-collar fibre protein	N/A
COG	UHGV-0049854_61	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0049854_62	phrog_17180	61.3	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0049854_62	1235799.C818_04237	58.9	0.0000000356	N/A	N/A
structural_annotation	UHGV-0049854_62	PF14282	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_64	phrog_199	79.7	3.5e-23	holin	lysis
UniRef90	UHGV-0049854_64	UniRef90_A0A3D4HRA5	189.0	0	Holin	N/A
eggNOG-mapper	UHGV-0049854_64	1469948.JPNB01000001_gene536	184.0	0	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-0049854_64	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0049854_64	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0049854_64	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0049854_64	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_65	phrog_2649	43.8	0.0000000000042	endolysin	lysis
UniRef90	UHGV-0049854_65	UniRef90_R6C8U0	286.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0049854_65	411902.CLOBOL_05642	118.0	2.93e-29	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-0049854_65	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0049854_65	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0049854_65	COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0049854_67	phrog_22978	76.5	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0049854_67	1131462.DCF50_p1798	259.0	0	N/A	N/A
Pfam	UHGV-0049854_67	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3